files-backend: replace submodule_allowed check in files_downcast()

files-backend: replace submodule_allowed check in files_downcast()

files-backend.c is unlearning submodules. Instead of having a specific
check for submodules to see what operation is allowed, files backend
now takes a set of flags at init. Each operation will check if the
required flags is present before performing.

For now we have four flags: read, write and odb access. Main ref store
has all flags, obviously, while submodule stores are read-only and have
access to odb (*).

The "main" flag stays because many functions in the backend calls
frontend ones without a ref store, so these functions always target the
main ref store. Ideally the flag should be gone after ref-store-aware
api is in place and used by backends.

(*) Submodule code needs for_each_ref. Try take REF_STORE_ODB flag
out. At least t3404 would fail. The "have access to odb" in submodule is
a bit hacky since we don't know from he whether add_submodule_odb() has
been called.

Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>