fsck: prepare dummy objects for --connectivity-check

fsck: prepare dummy objects for --connectivity-check

Normally fsck makes a pass over all objects to check their
integrity, and then follows up with a reachability check to
make sure we have all of the referenced objects (and to know
which ones are dangling). The latter checks for the HAS_OBJ
flag in obj->flags to see if we found the object in the
first pass.

Commit 02976bf85 (fsck: introduce `git fsck --connectivity-only`,
2015-06-22) taught fsck to skip the initial pass, and to
fallback to has_sha1_file() instead of the HAS_OBJ check.

However, it converted only one HAS_OBJ check to use
has_sha1_file(). But there are many other places in
builtin/fsck.c that assume that the flag is set (or that
lookup_object() will return an object at all). This leads to
several bugs with --connectivity-only:

  1. mark_object() will not queue objects for examination,
     so recursively following links from commits to trees,
     etc, did nothing. I.e., we were checking the
     reachability of hardly anything at all.

  2. When a set of heads is given on the command-line, we
     use lookup_object() to see if they exist. But without
     the initial pass, we assume nothing exists.

  3. When loading reflog entries, we do a similar
     lookup_object() check, and complain that the reflog is
     broken if the object doesn't exist in our hash.

So in short, --connectivity-only is broken pretty badly, and
will claim that your repository is fine when it's not.
Presumably nobody noticed for a few reasons.

One is that the embedded test does not actually test the
recursive nature of the reachability check. All of the
missing objects are still in the index, and we directly
check items from the index. This patch modifies the test to
delete the index, which shows off breakage (1).

Another is that --connectivity-only just skips the initial
pass for loose objects. So on a real repository, the packed
objects were still checked correctly. But on the flipside,
it means that "git fsck --connectivity-only" still checks
the sha1 of all of the packed objects, nullifying its
original purpose of being a faster git-fsck.

And of course the final problem is that the bug only shows
up when there _is_ corruption, which is rare. So anybody
running "git fsck --connectivity-only" proactively would
assume it was being thorough, when it was not.

One possibility for fixing this is to find all of the spots
that rely on HAS_OBJ and tweak them for the connectivity-only
case. But besides the risk that we might miss a spot (and I
found three already, corresponding to the three bugs above),
there are other parts of fsck that _can't_ work without a
full list of objects. E.g., the list of dangling objects.

Instead, let's make the connectivity-only case look more
like the normal case. Rather than skip the initial pass
completely, we'll do an abbreviated one that sets up the
HAS_OBJ flag for each object, without actually loading the
object data.

That's simple and fast, and we don't have to care about the
connectivity_only flag in the rest of the code at all.
While we're at it, let's make sure we treat loose and packed
objects the same (i.e., setting up dummy objects for both
and skipping the actual sha1 check). That makes the
connectivity-only check actually fast on a real repo (40
seconds versus 180 seconds on my copy of linux.git).

Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>