From c12a9d7f41682491b16e79fc4f436c72518eed19 Mon Sep 17 00:00:00 2001
From: Matthias Sohn <matthias.sohn@sap.com>
Date: Mon, 28 Sep 2015 00:59:01 +0200
Subject: [PATCH] Update documentation for 4.1

Change-Id: Ib99e39c12b09b2731faef591d323542b89b583ba
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
---
 org.eclipse.egit.doc/build-help.xml                |   4 +-
 .../help/EGit/Contributor_Guide/Bugs.html          |  27 ++++--
 .../help/EGit/Contributor_Guide/Builds.html        |   7 +-
 .../Development-IDE-Configuration.html             |   8 +-
 .../Git-For-Eclipse-Users.html                     |   4 +-
 .../help/EGit/New_and_Noteworthy/4.0/4.0.html      |  93 ------------------
 .../help/EGit/New_and_Noteworthy/4.1/4.1.html      |  95 +++++++++++++++++++
 .../New_and_Noteworthy/{4.0 => 4.1}/Bug-Fixes.html |  16 ++--
 .../{4.0 => 4.1}/Contributors.html                 |  35 +++----
 .../{4.0 => 4.1}/Updating-This-Document.html       |   8 +-
 .../help/EGit/User_Guide/Tasks.html                |  19 +++-
 .../help/EGit/User_Guide/User-Guide.html           |   2 +-
 ...it-4.0-git_flow-repository_node_right_click.png | Bin 0 -> 529 bytes
 ...0-git_flow_init-repository_node_right_click.png | Bin 0 -> 503 bytes
 ...tart_release_from_history_view_context_menu.png | Bin 0 -> 1927 bytes
 ...it_flow_submenu-repository_node_right_click.png | Bin 0 -> 2357 bytes
 .../help/JGit/New_and_Noteworthy/4.0/4.0.html      | 105 ---------------------
 .../help/JGit/New_and_Noteworthy/4.1/4.1.html      |  79 ++++++++++++++++
 .../New_and_Noteworthy/{4.0 => 4.1}/Bug-Fixes.html |  16 ++--
 .../{4.0 => 4.1}/Contributors.html                 |  24 ++---
 .../{4.0 => 4.1}/Updating-This-Document.html       |   8 +-
 org.eclipse.egit.doc/help/toc.xml                  |  54 ++++++-----
 22 files changed, 305 insertions(+), 299 deletions(-)
 delete mode 100644 org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/4.0.html
 create mode 100644 org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/4.1.html
 rename org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/{4.0 => 4.1}/Bug-Fixes.html (78%)
 rename org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/{4.0 => 4.1}/Contributors.html (81%)
 rename org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/{4.0 => 4.1}/Updating-This-Document.html (87%)
 create mode 100644 org.eclipse.egit.doc/help/EGit/User_Guide/images/Egit-4.0-git_flow-repository_node_right_click.png
 create mode 100644 org.eclipse.egit.doc/help/EGit/User_Guide/images/Egit-4.0-git_flow_init-repository_node_right_click.png
 create mode 100644 org.eclipse.egit.doc/help/EGit/User_Guide/images/Egit-4.0-git_flow_start_release_from_history_view_context_menu.png
 create mode 100644 org.eclipse.egit.doc/help/EGit/User_Guide/images/Egit-4.0-git_flow_submenu-repository_node_right_click.png
 delete mode 100644 org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/4.0.html
 create mode 100644 org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/4.1.html
 rename org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/{4.0 => 4.1}/Bug-Fixes.html (78%)
 rename org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/{4.0 => 4.1}/Contributors.html (83%)
 rename org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/{4.0 => 4.1}/Updating-This-Document.html (87%)

diff --git a/org.eclipse.egit.doc/build-help.xml b/org.eclipse.egit.doc/build-help.xml
index e480f4518..2e889e1da 100644
--- a/org.eclipse.egit.doc/build-help.xml
+++ b/org.eclipse.egit.doc/build-help.xml
@@ -47,8 +47,8 @@
 			>
 				<path name="EGit/User_Guide" title="EGit User Guide" />
 				<path name="JGit/User_Guide" title="JGit User Guide" />
-				<path name="EGit/New_and_Noteworthy/4.0" title="EGit 4.0 New and Noteworthy" />
-				<path name="JGit/New_and_Noteworthy/4.0" title="JGit 4.0 New and Noteworthy" />
+				<path name="EGit/New_and_Noteworthy/4.1" title="EGit 4.1 New and Noteworthy" />
+				<path name="JGit/New_and_Noteworthy/4.1" title="JGit 4.1 New and Noteworthy" />
 				<path name="EGit/Git_For_Eclipse_Users" title="Git for Eclipse Users" />
 				<path name="EGit/Contributor_Guide" title="EGit Contributor Guide" />
 				<stylesheet url="book.css" />
diff --git a/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Bugs.html b/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Bugs.html
index 7877a825e..d6cfb9e2c 100644
--- a/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Bugs.html
+++ b/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Bugs.html
@@ -39,12 +39,27 @@
 		</p>
 		<h2 id="Links">Links</h2>
 		<h3 id="Filing_Bugs">Filing Bugs</h3>
-		<p>
-			<a href="https://bugs.eclipse.org/bugs/enter_bug.cgi?product=EGit&amp;rep_platform=All&amp;op_sys=All" target="egit_external">File a bug for EGit</a>
-		</p>
-		<p>
-			<a href="https://bugs.eclipse.org/bugs/enter_bug.cgi?product=JGit&amp;rep_platform=All&amp;op_sys=All" target="egit_external">File a bug for JGit</a>
-		</p>
+		<h4 id="How_to_file_bugs">How to file bugs</h4>
+		<ul>
+			<li>
+				<a href="http://wiki.eclipse.org/FAQ_How_do_I_report_a_bug_in_Eclipse%3F" title="FAQ_How_do_I_report_a_bug_in_Eclipse%3F" target="egit_external">How do I report a bug in Eclipse?</a> 
+			</li>
+			<li>
+				<a href="https://bugs.eclipse.org/bugs/page.cgi?id=bug-writing.html" target="egit_external">Bug Writing Guidelines</a>
+			</li>
+			<li>
+				<a href="http://www.chiark.greenend.org.uk/~sgtatham/bugs.html" target="egit_external">How to Report Bugs Effectively</a> by Simon Tatham
+			</li>
+		</ul>
+		<h4 id="File_a_bug">File a bug</h4>
+		<ul>
+			<li>
+				<a href="https://bugs.eclipse.org/bugs/enter_bug.cgi?product=EGit&amp;rep_platform=All&amp;op_sys=All" target="egit_external">File a bug for EGit</a>
+			</li>
+			<li>
+				<a href="https://bugs.eclipse.org/bugs/enter_bug.cgi?product=JGit&amp;rep_platform=All&amp;op_sys=All" target="egit_external">File a bug for JGit</a>
+			</li>
+		</ul>
 		<h3 id="Bug_Reports_and_Links">Bug Reports and Links</h3>
 		<table border="1" cellpadding="3" cellspacing="0">
 			<tr>
diff --git a/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Builds.html b/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Builds.html
index c63a36cbb..6d07ef215 100644
--- a/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Builds.html
+++ b/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Builds.html
@@ -136,11 +136,10 @@
 		<h2 id="Checking_for_JGit_API_Changes_using_API_Baseline">Checking for JGit API Changes using API Baseline</h2>
 		<p>The JGit projects have API tooling enabled. In order to use PDE API tools to get assistance with maintaining API changes and additions you need to set an API baseline:</p>
 		<ul>
-			<li>download the p2 repository for the latest EGit release (which includes the JGit artifacts) to a local folder, e.g. <code>~/egit-releases/updates-3.0</code>, find the p2 repository URLs 
-				<a href="http://wiki.eclipse.org/EGit/FAQ#Where_can_I_find_older_releases_of_EGit.3F" target="egit_external">here</a> and see 
-				<a href="http://wiki.eclipse.org/Equinox_p2_Repository_Mirroring#Mirroring_Artifacts" target="egit_external">mirroring artifacts</a> for a way to download the repository
+			<li>download the p2 repository for the latest EGit release (which includes the JGit artifacts) to a local folder, e.g. <code>~/egit-releases/updates-4.0</code>, find the p2 repository URLs 
+				<a href="http://wiki.eclipse.org/EGit/FAQ#Where_can_I_find_older_releases_of_EGit.3F" target="egit_external">here</a> and download the p2 repository of the latest minor release (service releases don't change API) using the corresponding link in the last column of that table
 			</li>
-			<li>in Eclipse click "Preferences &gt; Plug-In Development &gt; API Baselines", click "Add Baseline..." and define a new baseline (e.g. egit-3.0) and point it to the local copy of the corresponding EGit p2 repository.</li>
+			<li>in Eclipse click "Preferences &gt; Plug-In Development &gt; API Baselines", click "Add Baseline..." and define a new baseline (e.g. egit-4.0) and point it to the local copy of the corresponding EGit p2 repository.</li>
 			<li>the API tools will then raise warning/errors for all detected problems and provide quick fixes helping to resolve these problems</li>
 			<li>see the 
 				<a href="http://wiki.eclipse.org/PDE/API_Tools/User_Guide" target="egit_external">PDE API Tools User Guide</a> for more details.
diff --git a/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Development-IDE-Configuration.html b/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Development-IDE-Configuration.html
index 82f48a612..07512de75 100644
--- a/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Development-IDE-Configuration.html
+++ b/org.eclipse.egit.doc/help/EGit/Contributor_Guide/Development-IDE-Configuration.html
@@ -30,7 +30,7 @@
 			</tr>
 		</table><hr/>
 		<h1 id="Development_IDE_Configuration">Development IDE Configuration</h1>
-		<p>Download and install "Eclipse for RCP and RAP Developers" from here, if you don't already have it:</p>
+		<p>Download and install the Eclipse package "Eclipse IDE for Eclipse Committers" or "Eclipse for RCP and RAP Developers" from here, if you don't already have it:</p>
 		<p>
 			<a href="http://www.eclipse.org/downloads/" target="egit_external">http://www.eclipse.org/downloads/</a>
 		</p>
@@ -71,7 +71,7 @@
 		</p>
 		<h2 id="Dependencies">Dependencies</h2>
 		<p>After importing the EGit and JGit projects in Eclipse, they will not compile due to missing dependencies. There are a few ways to install these.</p>
-		<h3 id="Option_1:_Use_a_Target_Platform">Option 1: Use a Target Platform</h3>
+		<h3 id="Option_1_.28recommended.29:_Use_a_Target_Platform">Option 1 (recommended): Use a Target Platform</h3>
 		<p>
 			<img align="right" title="EGit target platforms in org.eclipse.egit.target" alt="EGit target platforms in org.eclipse.egit.target" border="0" src="images/EGit-Target-Platforms.png‎"/>
 		</p>
@@ -81,10 +81,10 @@
 				<i>org.eclipse.egit.target</i> project
 			</li>
 			<li>Choose the 
-				<i>egit-&lt;version&gt;.target</i> file matching the version of your Eclipse platform (e.g. 4.2 for Juno) and open it (this may take a while as it downloads the indexes of the p2 repositories the target platform refers to)
+				<i>egit-&lt;version&gt;.target</i> file matching the version of your Eclipse platform (e.g. 4.5 for Mars) and open it (this may take a while as it downloads the indexes of the p2 repositories the target platform refers to)
 			</li>
 			<li>In the resulting editor, click on the 
-				<i>Set as Target Platform</i> link at the top right (this may also take a while)
+				<i>Set as Target Platform</i> link at the top right (this may also take a while since it downloads the dependencies)
 			</li>
 		</ul>
 		<p>After that, the workspace should build cleanly. If not, try Project &gt; Clean... &gt; All. If this also doesn't help open Preferences &gt; Plug-In Development &gt; Target Platform,
diff --git a/org.eclipse.egit.doc/help/EGit/Git_For_Eclipse_Users/Git-For-Eclipse-Users.html b/org.eclipse.egit.doc/help/EGit/Git_For_Eclipse_Users/Git-For-Eclipse-Users.html
index 65cde4fda..05ce6d160 100644
--- a/org.eclipse.egit.doc/help/EGit/Git_For_Eclipse_Users/Git-For-Eclipse-Users.html
+++ b/org.eclipse.egit.doc/help/EGit/Git_For_Eclipse_Users/Git-For-Eclipse-Users.html
@@ -428,7 +428,7 @@ Unpacking objects: 100% (5/5), done.
 To /tmp/other
  * <a href="new">branch</a>      french -&gt; french
  * <a href="new">branch</a>      web -&gt; web
-$ cd /tmp/other # Switch to 'other' repository
+$ cd /tmp/other # Switch to 'other' repository. git commands now apply to this repository
 $ git config --bool core.bare false # need to allow this repository to have checked out files
 $ ls # Nothing to be seen, but it's there
 $ git branch
@@ -442,7 +442,7 @@ $ echo '&lt;h1&gt;Git rocks!&lt;/h1&gt;' &gt;&gt; index.html
 $ git commit -a -m "Added Git Rocks!"
 <a href="web">510621a</a> Added Git Rocks
  1 files changed, 1 insertions(+), 0 deletions(-)
-$ cd /tmp/example # Back to first repo
+$ cd /tmp/example # Back to first repo. git commands now apply to 'example' repository
 $ git pull other web # Pull changes from 'other' repo 'web' branch
 remote: Counting objects: 5, done.
 remote: Compressing objects: 100% (3/3), done.
diff --git a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/4.0.html b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/4.0.html
deleted file mode 100644
index 9a4b0dc22..000000000
--- a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/4.0.html
+++ /dev/null
@@ -1,93 +0,0 @@
-<?xml version='1.0' encoding='utf-8' ?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-	<head>
-		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>EGit 4.0 New and Noteworthy</title>
-		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
-	</head>
-	<body>
-		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
-			<tr>
-				<th style="width: 100%" align="center" colspan="3">EGit 4.0 New and Noteworthy</th>
-			</tr>
-			<tr>
-				<td style="width: 20%" align="left"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right">
-					<a href="Bug-Fixes.html" title="Bug Fixes">
-						<img alt="Next" border="0" src="../../../images/next.gif"/>
-					</a>
-				</td>
-			</tr>
-			<tr>
-				<td style="width: 20%" align="left" valign="top"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
-			</tr>
-		</table><hr/>
-		<h1 id="EGit">EGit</h1>
-		<h2 id="Features">Features</h2>
-		<ul>
-			<li>Extend EGit to support git-flow 
-				<a href="1">1</a> to automate git branching workflow
-			</li>
-			<li>Introduce internal API to integrate Team merging to prepare support for model merge</li>
-			<li>Wizard for invoking automated project import</li>
-			<li>Prevent Git Staging view to lose data when precommit hook aborts commit</li>
-			<li>Show message dialog when hook aborts commit</li>
-			<li>Java templates variables for Git config variables</li>
-		</ul>
-		<p>
-			<a href="1">1</a> 
-			<a href="http://jeffkreeftmeijer.com/2010/why-arent-you-using-git-flow/" target="egit_external">http://jeffkreeftmeijer.com/2010/why-arent-you-using-git-flow/</a>
-		</p>
-		<h2 id="Usability_Improvements">Usability Improvements</h2>
-		<ul>
-			<li>Sort branches in "Push to Gerrit" wizard case insensitive</li>
-			<li>Automatic wildcard matching in "Add Git repositories" dialog</li>
-			<li>Make PushResultDialog non-modal</li>
-			<li>Properly style PushResultDialog in dark theme</li>
-			<li>Fix styling of staging view and commit dialog for dark theme</li>
-			<li>Add interactive rebase tooltip descriptions</li>
-			<li>Raise warning if second line of commit message isn't empty</li>
-			<li>Add sash to PushResultTable to allow resizing text field used to display push message</li>
-			<li>Avoid blinking cursor in merge result dialog</li>
-			<li>Accept git clone command as URI in clone wizard</li>
-			<li>Close commit editor after deleting stash</li>
-			<li>Consider different users and repo suffixes in project import</li>
-			<li>Make welcome page contribution more consistent</li>
-		</ul>
-		<h2 id="Performance_Improvements">Performance Improvements</h2>
-		<ul>
-			<li>Use image descriptors cache for external programs</li>
-			<li>Optimizations for GitResourceDeltaVisitor visit()</li>
-			<li>Fix ResourceUtil performance on big repositories/workspaces</li>
-			<li>Allow to switch the branch sequence off in the commit message viewer</li>
-		</ul>
-		<h2 id="Build_and_release_engineering">Build and release engineering</h2>
-		<ul>
-			<li>Update minimum required Java version to Java 7</li>
-			<li>Update build to use eclipse-jarsigner-plugin 1.1.2</li>
-			<li>Update to Jetty 9.2.10</li>
-			<li>Update to javax.servlet 3.1</li>
-			<li>Oomph configuration to setup Eclipse for EGit contributors</li>
-			<li>Update build to use Tycho 0.23.0</li>
-		</ul><hr/>
-		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
-			<tr>
-				<td style="width: 20%" align="left"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right">
-					<a href="Bug-Fixes.html" title="Bug Fixes">
-						<img alt="Next" border="0" src="../../../images/next.gif"/>
-					</a>
-				</td>
-			</tr>
-			<tr>
-				<td style="width: 20%" align="left" valign="top"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
-			</tr>
-		</table>
-	</body>
-</html>
\ No newline at end of file
diff --git a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/4.1.html b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/4.1.html
new file mode 100644
index 000000000..f406f8a26
--- /dev/null
+++ b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/4.1.html
@@ -0,0 +1,95 @@
+<?xml version='1.0' encoding='utf-8' ?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+	<head>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
+		<title>EGit 4.1 New and Noteworthy</title>
+		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
+	</head>
+	<body>
+		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
+			<tr>
+				<th style="width: 100%" align="center" colspan="3">EGit 4.1 New and Noteworthy</th>
+			</tr>
+			<tr>
+				<td style="width: 20%" align="left"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right">
+					<a href="Bug-Fixes.html" title="Bug Fixes">
+						<img alt="Next" border="0" src="../../../images/next.gif"/>
+					</a>
+				</td>
+			</tr>
+			<tr>
+				<td style="width: 20%" align="left" valign="top"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
+			</tr>
+		</table><hr/>
+		<h1 id="EGit">EGit</h1>
+		<h2 id="Merge_Strategy_Extension_Point">Merge Strategy Extension Point</h2>
+		<p>Introduce a merge strategy extension point which allows to plugin custom merge strategies. This will be used by EMF Compare to add support for merging models.</p>
+		<h2 id="Staging_View_and_Commit_Dialog">Staging View and Commit Dialog</h2>
+		<ul>
+			<li>Add check for build warnings and errors before commit. Optionally block commit if there are any problems reported</li>
+			<li>Make warning for non-empty second line of commit message optional</li>
+			<li>Consider initial selection in Staging View</li>
+			<li>Improve Staging View to remember position of its components</li>
+			<li>Introduce compare mode for Git Staging View similar to History View</li>
+		</ul>
+		<h2 id="History_View">History View</h2>
+		<ul>
+			<li>Rewrite CommitMessageViewer to use JFace</li>
+			<li>Simplify hyperlink syntax coloring</li>
+			<li>Use standard hyperlink link colors</li>
+		</ul>
+		<h2 id="Repositories_View">Repositories View</h2>
+		<ul>
+			<li>Decorate repository in Repositories View if working tree is dirty</li>
+			<li>Use decoration color to render dirty decorator in repositories view</li>
+			<li>Improve sorting of nodes in Repositories View</li>
+		</ul>
+		<h2 id="Other_Enhancements">Other Enhancements</h2>
+		<ul>
+			<li>Auto-configure Gerrit after ssh clone</li>
+			<li>Add "Compare with/Replace with" actions to ResourceMappings</li>
+			<li>Use the default repository folder when importing Team project sets</li>
+			<li>Consider initial selection in Interactive Rebase view</li>
+		</ul>
+		<h2 id="Gitflow_Support">Gitflow Support</h2>
+		<ul>
+			<li>Allow changing branch names when initializing a Gitflow repository</li>
+			<li>Add icon decorations to identify gitflow repositories</li>
+			<li>Allow changing the commit message during feature finish with squash option</li>
+			<li>Implement squash and keep branch options for feature finish</li>
+		</ul>
+		<h2 id="Performance_Improvements">Performance Improvements</h2>
+		<ul>
+			<li>Do not iterate over all staged view entries if not needed</li>
+			<li>Add default limit for number of shown diff lines in history</li>
+		</ul>
+		<h2 id="Release_Engineering_and_Build">Release Engineering and Build</h2>
+		<ul>
+			<li>Update swtbot to 2.3.0</li>
+			<li>Update org.apache.httpcomponents used by JGit to 4.3</li>
+			<li>Stabilize unstable UI tests</li>
+			<li>Add Gitflow UI tests</li>
+			<li>Enable NPE analysis in EGit</li>
+		</ul><hr/>
+		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
+			<tr>
+				<td style="width: 20%" align="left"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right">
+					<a href="Bug-Fixes.html" title="Bug Fixes">
+						<img alt="Next" border="0" src="../../../images/next.gif"/>
+					</a>
+				</td>
+			</tr>
+			<tr>
+				<td style="width: 20%" align="left" valign="top"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
+			</tr>
+		</table>
+	</body>
+</html>
\ No newline at end of file
diff --git a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Bug-Fixes.html b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Bug-Fixes.html
similarity index 78%
rename from org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Bug-Fixes.html
rename to org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Bug-Fixes.html
index a473c9da3..5acbf4afa 100644
--- a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Bug-Fixes.html
+++ b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Bug-Fixes.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
 	<head>
 		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>EGit 4.0 New and Noteworthy - Bug Fixes</title>
+		<title>EGit 4.1 New and Noteworthy - Bug Fixes</title>
 		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
 	</head>
 	<body>
@@ -12,7 +12,7 @@
 			</tr>
 			<tr>
 				<td style="width: 20%" align="left">
-					<a href="4.0.html" title="EGit 4.0 New and Noteworthy">
+					<a href="4.1.html" title="EGit 4.1 New and Noteworthy">
 						<img alt="Previous" border="0" src="../../../images/prev.gif"/>
 					</a>
 				</td>
@@ -24,25 +24,25 @@
 				</td>
 			</tr>
 			<tr>
-				<td style="width: 20%" align="left" valign="top">EGit 4.0 New and Noteworthy</td>
+				<td style="width: 20%" align="left" valign="top">EGit 4.1 New and Noteworthy</td>
 				<td style="width: 60%" align="center"></td>
 				<td style="width: 20%" align="right" valign="top">Contributors</td>
 			</tr>
 		</table><hr/>
 		<h1 id="Bug_Fixes">Bug Fixes</h1>
 		<p>
-			<a href="https://bugs.eclipse.org/bugs/buglist.cgi?resolution=FIXED&amp;resolution=DUPLICATE&amp;classification=Technology&amp;list_id=10006180&amp;order=Importance&amp;product=EGit&amp;query_format=advanced&amp;target_milestone=4.0" target="egit_external">40 Bugs and 5 enhancement requests</a> were closed
+			<a href="https://bugs.eclipse.org/bugs/buglist.cgi?resolution=FIXED&amp;resolution=DUPLICATE&amp;classification=Technology&amp;list_id=10006180&amp;order=Importance&amp;product=EGit&amp;query_format=advanced&amp;target_milestone=4.1" target="egit_external">47 Bugs and 17 enhancement requests</a> were closed
 		</p><hr/>
 		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
 			<tr>
 				<td style="width: 20%" align="left">
-					<a href="4.0.html" title="EGit 4.0 New and Noteworthy">
+					<a href="4.1.html" title="EGit 4.1 New and Noteworthy">
 						<img alt="Previous" border="0" src="../../../images/prev.gif"/>
 					</a>
 				</td>
 				<td style="width: 60%" align="center">
-					<a href="4.0.html" title="EGit 4.0 New and Noteworthy">
-						<img alt="EGit 4.0 New and Noteworthy" border="0" src="../../../images/home.gif"/>
+					<a href="4.1.html" title="EGit 4.1 New and Noteworthy">
+						<img alt="EGit 4.1 New and Noteworthy" border="0" src="../../../images/home.gif"/>
 					</a>
 				</td>
 				<td style="width: 20%" align="right">
@@ -52,7 +52,7 @@
 				</td>
 			</tr>
 			<tr>
-				<td style="width: 20%" align="left" valign="top">EGit 4.0 New and Noteworthy</td>
+				<td style="width: 20%" align="left" valign="top">EGit 4.1 New and Noteworthy</td>
 				<td style="width: 60%" align="center"></td>
 				<td style="width: 20%" align="right" valign="top">Contributors</td>
 			</tr>
diff --git a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Contributors.html b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Contributors.html
similarity index 81%
rename from org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Contributors.html
rename to org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Contributors.html
index ebd382e83..1a74fa323 100644
--- a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Contributors.html
+++ b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Contributors.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
 	<head>
 		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>EGit 4.0 New and Noteworthy - Contributors</title>
+		<title>EGit 4.1 New and Noteworthy - Contributors</title>
 		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
 	</head>
 	<body>
@@ -30,28 +30,29 @@
 			</tr>
 		</table><hr/>
 		<h1 id="Contributors">Contributors</h1>
-		<p>The following 21 developers worked on this release:</p>
+		<p>The following 22 developers worked on this release:</p>
 		<p>Andrey Loskutov,
+			Chris Price,
 			Christian Georgi,
-			Christian Halstrick,
-			Chris Rebert,
 			Dani Megert,
-			Erwin van Eyk,
-			Fabio Zadrozny,
-			Gunnar Wagenknecht,
+			Denis Zygann,
+			Jan-Ove Weichel,
+			Joachim Käßer,
 			Jon Ander Peñalba,
-			Kyle J. Harms,
+			Karsten Panier,
 			Lars Vogel,
 			Laurent Delaigue,
-			Laurent Goubet,
-			Markus Keller,
 			Matthias Sohn,
+			Markus Keller,
 			Max Hohenegger,
-			Michael Mathews,
-			Michael Keppler,
-			Mickael Istria,
-			Radim Hopp,
-			rnveach</p><hr/>
+			Mykola Nikishov,
+			Pawel Nowak,
+			Peter Karena,
+			Philipp Bumann,
+			Stefan Dirix,
+			Thomas Wolf,
+			Tobias Baumann,
+			Wayne Beaton</p><hr/>
 		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
 			<tr>
 				<td style="width: 20%" align="left">
@@ -60,8 +61,8 @@
 					</a>
 				</td>
 				<td style="width: 60%" align="center">
-					<a href="4.0.html" title="EGit 4.0 New and Noteworthy">
-						<img alt="EGit 4.0 New and Noteworthy" border="0" src="../../../images/home.gif"/>
+					<a href="4.1.html" title="EGit 4.1 New and Noteworthy">
+						<img alt="EGit 4.1 New and Noteworthy" border="0" src="../../../images/home.gif"/>
 					</a>
 				</td>
 				<td style="width: 20%" align="right">
diff --git a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Updating-This-Document.html b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Updating-This-Document.html
similarity index 87%
rename from org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Updating-This-Document.html
rename to org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Updating-This-Document.html
index bb6ac72dd..c50a5541d 100644
--- a/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.0/Updating-This-Document.html
+++ b/org.eclipse.egit.doc/help/EGit/New_and_Noteworthy/4.1/Updating-This-Document.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
 	<head>
 		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>EGit 4.0 New and Noteworthy - Updating This Document</title>
+		<title>EGit 4.1 New and Noteworthy - Updating This Document</title>
 		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
 	</head>
 	<body>
@@ -29,7 +29,7 @@
 		<p>					This document is maintained in a collaborative wiki. If you wish to
 								update or modify this document please visit
 								
-			<a href="http://wiki.eclipse.org/EGit/New_and_Noteworthy/4.0" target="egit_external">http://wiki.eclipse.org/EGit/New_and_Noteworthy/4.0</a>
+			<a href="http://wiki.eclipse.org/EGit/New_and_Noteworthy/4.1" target="egit_external">http://wiki.eclipse.org/EGit/New_and_Noteworthy/4.1</a>
 		</p><hr/>
 		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
 			<tr>
@@ -39,8 +39,8 @@
 					</a>
 				</td>
 				<td style="width: 60%" align="center">
-					<a href="4.0.html" title="EGit 4.0 New and Noteworthy">
-						<img alt="EGit 4.0 New and Noteworthy" border="0" src="../../../images/home.gif"/>
+					<a href="4.1.html" title="EGit 4.1 New and Noteworthy">
+						<img alt="EGit 4.1 New and Noteworthy" border="0" src="../../../images/home.gif"/>
 					</a>
 				</td>
 				<td style="width: 20%" align="right"></td>
diff --git a/org.eclipse.egit.doc/help/EGit/User_Guide/Tasks.html b/org.eclipse.egit.doc/help/EGit/User_Guide/Tasks.html
index db94b0b0c..99d626a55 100644
--- a/org.eclipse.egit.doc/help/EGit/User_Guide/Tasks.html
+++ b/org.eclipse.egit.doc/help/EGit/User_Guide/Tasks.html
@@ -718,15 +718,30 @@
 			<a href="http://nvie.com/posts/a-successful-git-branching-model/" target="egit_external">http://nvie.com/posts/a-successful-git-branching-model/</a>), EGit allows you to work with Gitflow operations, managing feature, release and hotfix branches.
 		</p>
 		<h3 id="Enabling_Gitflow_for_a_repository">Enabling Gitflow for a repository</h3>
-		<p>Gitflow operation will not appear, unless the selected repository is configured for Gitflow. To do that, open the context menu on a repository in the Git Repositories view and select 
+		<p>Gitflow operations will not appear unless the selected repository is configured for Gitflow. To do that, open the context menu on a repository in the Git Repositories view and select 
 			<b>Init Git Flow</b>.
-			You can skip this step, if your repository was already configured for Gitflow by another client.
+
+			<img border="0" src="images/Egit-4.0-git_flow_init-repository_node_right_click.png"/>
 		</p>
+		<p>You can skip this step if your repository was already configured for Gitflow by another client.</p>
 		<h3 id="Starting_a_feature.2Frelease.2Fhotfix">Starting a feature/release/hotfix</h3>
 		<p>Right-click on a repository, select 
 			<b>Git Flow</b>, and select the appropriate start command.
 		</p>
+		<p>
+			<img border="0" src="images/Egit-4.0-git_flow-repository_node_right_click.png"/>
+
+			<img border="0" src="images/Egit-4.0-git_flow_submenu-repository_node_right_click.png"/>
+		</p>
 		<p>A dialog will appear that lets you enter a name for the Gitflow branch, adding the correct prefix automatically.</p>
+		<h3 id="Starting_release_from_a_commit_other_than_HEAD">Starting release from a commit other than HEAD</h3>
+		<p>Go to the EGit History view, and right-click the commit you want to start the release from.
+			In the context menu, go to 
+			<b>Git Flow</b>, and select 
+			<b>Start release from commit &lt;sha1&gt;</b>.
+
+			<img border="0" src="images/Egit-4.0-git_flow_start_release_from_history_view_context_menu.png"/>
+		</p>
 		<h2 id="Inspecting_the_state_of_the_Repository">Inspecting the state of the Repository</h2>
 		<h3 id="Label_Decorations">Label Decorations</h3>
 		<p>Label decorations show Git-specific information about resources under Git version control. They appear in all views showing model objects, like Package Explorer, Project Explorer, Navigator, and Hierarchy View.</p>
diff --git a/org.eclipse.egit.doc/help/EGit/User_Guide/User-Guide.html b/org.eclipse.egit.doc/help/EGit/User_Guide/User-Guide.html
index 566b93bd0..58310836f 100644
--- a/org.eclipse.egit.doc/help/EGit/User_Guide/User-Guide.html
+++ b/org.eclipse.egit.doc/help/EGit/User_Guide/User-Guide.html
@@ -268,7 +268,7 @@
 		<h3 id="Eclipse_SSH_Configuration">Eclipse SSH Configuration</h3>
 		<ul>
 			<li>Open the Eclipse 
-				<b>Preferences</b> and ensure that your SSH2 home is configured correctly (usually this is <tt>~/.ssh</tt>) and contains your SSH2 keys:
+				<b>Preferences</b>.  Navigate to and expand the Network Connections option and select SSH. Ensure that your SSH2 home is configured correctly (usually this is <tt>~/.ssh</tt>) and contains your SSH2 keys:
 			</li>
 		</ul>
 		<p>
diff --git a/org.eclipse.egit.doc/help/EGit/User_Guide/images/Egit-4.0-git_flow-repository_node_right_click.png b/org.eclipse.egit.doc/help/EGit/User_Guide/images/Egit-4.0-git_flow-repository_node_right_click.png
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diff --git a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/4.0.html b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/4.0.html
deleted file mode 100644
index 4e092a6f8..000000000
--- a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/4.0.html
+++ /dev/null
@@ -1,105 +0,0 @@
-<?xml version='1.0' encoding='utf-8' ?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml">
-	<head>
-		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>JGit 4.0 New and Noteworthy</title>
-		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
-	</head>
-	<body>
-		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
-			<tr>
-				<th style="width: 100%" align="center" colspan="3">JGit 4.0 New and Noteworthy</th>
-			</tr>
-			<tr>
-				<td style="width: 20%" align="left"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right">
-					<a href="Bug-Fixes.html" title="Bug Fixes">
-						<img alt="Next" border="0" src="../../../images/next.gif"/>
-					</a>
-				</td>
-			</tr>
-			<tr>
-				<td style="width: 20%" align="left" valign="top"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
-			</tr>
-		</table><hr/>
-		<h1 id="JGit">JGit</h1>
-		<h2 id="Update_to_Java_7">Update to Java 7</h2>
-		<ul>
-			<li>Update minimum required Java version from Java 5 to Java 7</li>
-			<li>Remove bundles org.eclipse.jgit.console and org.eclipse.jgit.java7 which are no longer needed due to update to Java 7</li>
-			<li>Implement AutoClosable and use it to ensure resource held by JGit get released when they are no longer needed</li>
-		</ul>
-		<h2 id="API_cleanup">API cleanup</h2>
-		<ul>
-			<li>Replace release() methods by close() to support AutoClosable</li>
-			<li>Delete some deprecated classes and methods, details are available in Clirr API change report</li>
-			<li>ObjectReader: remove the walkAdvice API</li>
-		</ul>
-		<h2 id="Configuration">Configuration</h2>
-		<ul>
-			<li>Remove the gitprefix logic and rework detecting Git system config file</li>
-			<li>Allow to manually set the path to the Git system config file</li>
-			<li>Add fsck.allowInvalidPersonIdent to accept invalid author/committers</li>
-		</ul>
-		<h2 id="Protocol">Protocol</h2>
-		<ul>
-			<li>Add support for quiet capability to ReceivePack</li>
-			<li>Support agent= capability in wire protocol</li>
-		</ul>
-		<h2 id="Hooks">Hooks</h2>
-		<ul>
-			<li>Support for the commit-msg hook</li>
-		</ul>
-		<h2 id="Misc._Enhancements">Misc. Enhancements</h2>
-		<ul>
-			<li>Allow ObjectWalk to be filtered by an arbitrary predicate</li>
-			<li>Use ANY_DIFF filter in ResolveMerger for bare repositories</li>
-			<li>ObjectWalk: make setRetainBody(false) the default</li>
-			<li>Make MyersDiff interruptible</li>
-			<li>Support --untracked-files in command line status command</li>
-			<li>Support "--long" option in DescribeCommand and command line describe command</li>
-			<li>Make s3 domain dynamic to support different s3 regions in AmazonS3 transport</li>
-			<li>Allow public access to PackIndex</li>
-			<li>Enhance ArchiveCommand to allow passing options to underlying stream</li>
-		</ul>
-		<h2 id="Introduce_logging">Introduce logging</h2>
-		<ul>
-			<li>Use slf4j API to enable logging in JGit</li>
-			<li>Use log4j-slf4j to log from org.eclipse.jgit.pgm</li>
-		</ul>
-		<h2 id="Performance_Improvements">Performance Improvements</h2>
-		<ul>
-			<li>Optimize EolAwareOutputStream for bulk output</li>
-			<li>Buffer TemporaryBuffer's overflow output stream used by ResolveMerger to improve performance</li>
-			<li>RevWalk: Discard uninteresting commits unless RevSort.BOUNDARY</li>
-		</ul>
-		<h2 id="Build_and_release_engineering">Build and release engineering</h2>
-		<ul>
-			<li>Update build to use eclipse-jarsigner-plugin 1.1.2</li>
-			<li>Update build to use Tycho 0.23.0</li>
-			<li>Update all standard maven plugins to latest versions</li>
-			<li>Update to Jetty 9.2.10</li>
-			<li>Update to javax.servlet 3.1</li>
-			<li>Added more reports to Maven site</li>
-		</ul><hr/>
-		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
-			<tr>
-				<td style="width: 20%" align="left"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right">
-					<a href="Bug-Fixes.html" title="Bug Fixes">
-						<img alt="Next" border="0" src="../../../images/next.gif"/>
-					</a>
-				</td>
-			</tr>
-			<tr>
-				<td style="width: 20%" align="left" valign="top"></td>
-				<td style="width: 60%" align="center"></td>
-				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
-			</tr>
-		</table>
-	</body>
-</html>
\ No newline at end of file
diff --git a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/4.1.html b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/4.1.html
new file mode 100644
index 000000000..daab83c06
--- /dev/null
+++ b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/4.1.html
@@ -0,0 +1,79 @@
+<?xml version='1.0' encoding='utf-8' ?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+	<head>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
+		<title>JGit 4.1 New and Noteworthy</title>
+		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
+	</head>
+	<body>
+		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
+			<tr>
+				<th style="width: 100%" align="center" colspan="3">JGit 4.1 New and Noteworthy</th>
+			</tr>
+			<tr>
+				<td style="width: 20%" align="left"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right">
+					<a href="Bug-Fixes.html" title="Bug Fixes">
+						<img alt="Next" border="0" src="../../../images/next.gif"/>
+					</a>
+				</td>
+			</tr>
+			<tr>
+				<td style="width: 20%" align="left" valign="top"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
+			</tr>
+		</table><hr/>
+		<h1 id="JGit">JGit</h1>
+		<h2 id="Basic_Support_for_Push_Certificates">Basic Support for Push Certificates</h2>
+		<ul>
+			<li>Push certificates are used to verify the pusher's identity when a git server receives a signed pack</li>
+			<li>Parsing of push certificates</li>
+			<li>Storage of push certificates, they are stored in a special ref "refs/meta/push-certs". The filenames in the tree are ref names followed by the special suffix "cert", and the contents are the latest push cert affecting that ref.</li>
+			<li>Configuration for server-side signed push verification</li>
+			<li>Support for push certificates in BaseReceivePack and RefUpdate</li>
+		</ul>
+		<h2 id="Ignore_Handling">Ignore Handling</h2>
+		<ul>
+			<li>Allow leading/trailing spaces in ignore rules</li>
+			<li>Allow leading literal '#' and '!' in ignore rules if they are escaped</li>
+			<li>Don't trim trailing space if it is escaped with backslash</li>
+		</ul>
+		<h2 id="Other_Enhancements">Other Enhancements</h2>
+		<ul>
+			<li>Add setTargetBranch in RepoCommand.</li>
+			<li>Add API to remove repositories from RepositoryCache</li>
+			<li>Add new submodule layout to SubmoduleAddCommand</li>
+			<li>Handle stale NFS file handles on packed-refs file</li>
+			<li>Add a grace period for packfiles during GC so that they are retained during GC until configured expiration age is reached</li>
+		</ul>
+		<h2 id="Performance_Improvements">Performance Improvements</h2>
+		<ul>
+			<li>Use java.io.File instead of NIO to check existence of loose objects in ObjectDirectory to speed up inserting of loose objects</li>
+			<li>Reduce memory consumption when creating bitmaps during writing pack files</li>
+		</ul>
+		<h2 id="Build_and_Release_Engineering">Build and Release Engineering</h2>
+		<ul>
+			<li>Enable annotation based NPE analysis in jgit</li>
+			<li>Update Jetty to 9.2.13.v20150730</li>
+			<li>Update org.apache.httpcomponents to 4.3</li>
+		</ul><hr/>
+		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
+			<tr>
+				<td style="width: 20%" align="left"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right">
+					<a href="Bug-Fixes.html" title="Bug Fixes">
+						<img alt="Next" border="0" src="../../../images/next.gif"/>
+					</a>
+				</td>
+			</tr>
+			<tr>
+				<td style="width: 20%" align="left" valign="top"></td>
+				<td style="width: 60%" align="center"></td>
+				<td style="width: 20%" align="right" valign="top">Bug Fixes</td>
+			</tr>
+		</table>
+	</body>
+</html>
\ No newline at end of file
diff --git a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Bug-Fixes.html b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Bug-Fixes.html
similarity index 78%
rename from org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Bug-Fixes.html
rename to org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Bug-Fixes.html
index 601bb84ea..8981eaf57 100644
--- a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Bug-Fixes.html
+++ b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Bug-Fixes.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
 	<head>
 		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>JGit 4.0 New and Noteworthy - Bug Fixes</title>
+		<title>JGit 4.1 New and Noteworthy - Bug Fixes</title>
 		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
 	</head>
 	<body>
@@ -12,7 +12,7 @@
 			</tr>
 			<tr>
 				<td style="width: 20%" align="left">
-					<a href="4.0.html" title="JGit 4.0 New and Noteworthy">
+					<a href="4.1.html" title="JGit 4.1 New and Noteworthy">
 						<img alt="Previous" border="0" src="../../../images/prev.gif"/>
 					</a>
 				</td>
@@ -24,25 +24,25 @@
 				</td>
 			</tr>
 			<tr>
-				<td style="width: 20%" align="left" valign="top">JGit 4.0 New and Noteworthy</td>
+				<td style="width: 20%" align="left" valign="top">JGit 4.1 New and Noteworthy</td>
 				<td style="width: 60%" align="center"></td>
 				<td style="width: 20%" align="right" valign="top">Contributors</td>
 			</tr>
 		</table><hr/>
 		<h1 id="Bug_Fixes">Bug Fixes</h1>
 		<p>
-			<a href="https://bugs.eclipse.org/bugs/buglist.cgi?classification=Technology&amp;list_id=10006180&amp;order=Importance&amp;product=JGit&amp;query_format=advanced&amp;resolution=FIXED&amp;resolution=DUPLICATE&amp;target_milestone=4.0" target="egit_external">10 Bugs and 1 enhancement requests</a> were closed
+			<a href="https://bugs.eclipse.org/bugs/buglist.cgi?classification=Technology&amp;list_id=10006180&amp;order=Importance&amp;product=JGit&amp;query_format=advanced&amp;resolution=FIXED&amp;resolution=DUPLICATE&amp;target_milestone=4.1" target="egit_external">11 Bugs and 3 enhancement requests</a> were closed
 		</p><hr/>
 		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
 			<tr>
 				<td style="width: 20%" align="left">
-					<a href="4.0.html" title="JGit 4.0 New and Noteworthy">
+					<a href="4.1.html" title="JGit 4.1 New and Noteworthy">
 						<img alt="Previous" border="0" src="../../../images/prev.gif"/>
 					</a>
 				</td>
 				<td style="width: 60%" align="center">
-					<a href="4.0.html" title="JGit 4.0 New and Noteworthy">
-						<img alt="JGit 4.0 New and Noteworthy" border="0" src="../../../images/home.gif"/>
+					<a href="4.1.html" title="JGit 4.1 New and Noteworthy">
+						<img alt="JGit 4.1 New and Noteworthy" border="0" src="../../../images/home.gif"/>
 					</a>
 				</td>
 				<td style="width: 20%" align="right">
@@ -52,7 +52,7 @@
 				</td>
 			</tr>
 			<tr>
-				<td style="width: 20%" align="left" valign="top">JGit 4.0 New and Noteworthy</td>
+				<td style="width: 20%" align="left" valign="top">JGit 4.1 New and Noteworthy</td>
 				<td style="width: 60%" align="center"></td>
 				<td style="width: 20%" align="right" valign="top">Contributors</td>
 			</tr>
diff --git a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Contributors.html b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Contributors.html
similarity index 83%
rename from org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Contributors.html
rename to org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Contributors.html
index 882a9cad0..aca519c55 100644
--- a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Contributors.html
+++ b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Contributors.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
 	<head>
 		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>JGit 4.0 New and Noteworthy - Contributors</title>
+		<title>JGit 4.1 New and Noteworthy - Contributors</title>
 		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
 	</head>
 	<body>
@@ -30,26 +30,22 @@
 			</tr>
 		</table><hr/>
 		<h1 id="Contributors">Contributors</h1>
-		<p>The following 20 developers worked on this release of JGit :</p>
+		<p>The following 16 developers worked on this release of JGit :</p>
 		<p>Andrey Loskutov,
-			André de Oliveira,
+			Chris Price,
 			Christian Halstrick,
 			Dave Borowitz,
-			David Ostrovsky,
 			David Pletcher,
-			Hector Oswaldo Caballero,
+			Fredrik Medley,
 			Hugo Arès,
+			Jacob Keller,
 			Jonathan Nieder,
-			Kaloyan Raev,
-			Laurent Delaigue,
-			Markus Duft,
-			Matthew Spurrier,
+			Martin Fick,
 			Matthias Sohn,
-			Saša Živkov,
-			Sebastian Schuberth,
+			Patrick Steinhardt,
 			Shawn Pearce,
-			Stefan Beller,
 			Terry Parker,
+			Tobias Oberlies,
 			Yuxuan 'fishy' Wang</p><hr/>
 		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
 			<tr>
@@ -59,8 +55,8 @@
 					</a>
 				</td>
 				<td style="width: 60%" align="center">
-					<a href="4.0.html" title="JGit 4.0 New and Noteworthy">
-						<img alt="JGit 4.0 New and Noteworthy" border="0" src="../../../images/home.gif"/>
+					<a href="4.1.html" title="JGit 4.1 New and Noteworthy">
+						<img alt="JGit 4.1 New and Noteworthy" border="0" src="../../../images/home.gif"/>
 					</a>
 				</td>
 				<td style="width: 20%" align="right">
diff --git a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Updating-This-Document.html b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Updating-This-Document.html
similarity index 87%
rename from org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Updating-This-Document.html
rename to org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Updating-This-Document.html
index 9e937c231..907bc748e 100644
--- a/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.0/Updating-This-Document.html
+++ b/org.eclipse.egit.doc/help/JGit/New_and_Noteworthy/4.1/Updating-This-Document.html
@@ -2,7 +2,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
 	<head>
 		<meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
-		<title>JGit 4.0 New and Noteworthy - Updating This Document</title>
+		<title>JGit 4.1 New and Noteworthy - Updating This Document</title>
 		<link type="text/css" rel="stylesheet" href="../../../book.css"/>
 	</head>
 	<body>
@@ -29,7 +29,7 @@
 		<p>					This document is maintained in a collaborative wiki. If you wish to
 								update or modify this document please visit
 								
-			<a href="http://wiki.eclipse.org/JGit/New_and_Noteworthy/4.0" target="egit_external">http://wiki.eclipse.org/JGit/New_and_Noteworthy/4.0</a>
+			<a href="http://wiki.eclipse.org/JGit/New_and_Noteworthy/4.1" target="egit_external">http://wiki.eclipse.org/JGit/New_and_Noteworthy/4.1</a>
 		</p><hr/>
 		<table class="navigation" style="width: 100%;" border="0" summary="navigation">
 			<tr>
@@ -39,8 +39,8 @@
 					</a>
 				</td>
 				<td style="width: 60%" align="center">
-					<a href="4.0.html" title="JGit 4.0 New and Noteworthy">
-						<img alt="JGit 4.0 New and Noteworthy" border="0" src="../../../images/home.gif"/>
+					<a href="4.1.html" title="JGit 4.1 New and Noteworthy">
+						<img alt="JGit 4.1 New and Noteworthy" border="0" src="../../../images/home.gif"/>
 					</a>
 				</td>
 				<td style="width: 20%" align="right"></td>
diff --git a/org.eclipse.egit.doc/help/toc.xml b/org.eclipse.egit.doc/help/toc.xml
index 22af51faa..cf38e0a7a 100644
--- a/org.eclipse.egit.doc/help/toc.xml
+++ b/org.eclipse.egit.doc/help/toc.xml
@@ -102,6 +102,7 @@
 			<topic href="help/EGit/User_Guide/Tasks.html#Working_with_Gitflow" label="Working with Gitflow">
 				<topic href="help/EGit/User_Guide/Tasks.html#Enabling_Gitflow_for_a_repository" label="Enabling Gitflow for a repository"></topic>
 				<topic href="help/EGit/User_Guide/Tasks.html#Starting_a_feature.2Frelease.2Fhotfix" label="Starting a feature/release/hotfix"></topic>
+				<topic href="help/EGit/User_Guide/Tasks.html#Starting_release_from_a_commit_other_than_HEAD" label="Starting release from a commit other than HEAD"></topic>
 			</topic>
 			<topic href="help/EGit/User_Guide/Tasks.html#Inspecting_the_state_of_the_Repository" label="Inspecting the state of the Repository">
 				<topic href="help/EGit/User_Guide/Tasks.html#Label_Decorations" label="Label Decorations">
@@ -441,32 +442,32 @@
 		</topic>
 		<topic href="help/JGit/User_Guide/Updating-This-Document.html" label="Updating This Document"></topic>
 	</topic>
-	<topic href="help/EGit/New_and_Noteworthy/4.0/4.0.html" label="EGit 4.0 New and Noteworthy">
-		<topic href="help/EGit/New_and_Noteworthy/4.0/4.0.html" label="EGit">
-			<topic href="help/EGit/New_and_Noteworthy/4.0/4.0.html#Features" label="Features"></topic>
-			<topic href="help/EGit/New_and_Noteworthy/4.0/4.0.html#Usability_Improvements" label="Usability Improvements"></topic>
-			<topic href="help/EGit/New_and_Noteworthy/4.0/4.0.html#Performance_Improvements" label="Performance Improvements"></topic>
-			<topic href="help/EGit/New_and_Noteworthy/4.0/4.0.html#Build_and_release_engineering" label="Build and release engineering"></topic>
+	<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html" label="EGit 4.1 New and Noteworthy">
+		<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html" label="EGit">
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#Merge_Strategy_Extension_Point" label="Merge Strategy Extension Point"></topic>
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#Staging_View_and_Commit_Dialog" label="Staging View and Commit Dialog"></topic>
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#History_View" label="History View"></topic>
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#Repositories_View" label="Repositories View"></topic>
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#Other_Enhancements" label="Other Enhancements"></topic>
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#Gitflow_Support" label="Gitflow Support"></topic>
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#Performance_Improvements" label="Performance Improvements"></topic>
+			<topic href="help/EGit/New_and_Noteworthy/4.1/4.1.html#Release_Engineering_and_Build" label="Release Engineering and Build"></topic>
 		</topic>
-		<topic href="help/EGit/New_and_Noteworthy/4.0/Bug-Fixes.html" label="Bug Fixes"></topic>
-		<topic href="help/EGit/New_and_Noteworthy/4.0/Contributors.html" label="Contributors"></topic>
-		<topic href="help/EGit/New_and_Noteworthy/4.0/Updating-This-Document.html" label="Updating This Document"></topic>
+		<topic href="help/EGit/New_and_Noteworthy/4.1/Bug-Fixes.html" label="Bug Fixes"></topic>
+		<topic href="help/EGit/New_and_Noteworthy/4.1/Contributors.html" label="Contributors"></topic>
+		<topic href="help/EGit/New_and_Noteworthy/4.1/Updating-This-Document.html" label="Updating This Document"></topic>
 	</topic>
-	<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html" label="JGit 4.0 New and Noteworthy">
-		<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html" label="JGit">
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Update_to_Java_7" label="Update to Java 7"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#API_cleanup" label="API cleanup"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Configuration" label="Configuration"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Protocol" label="Protocol"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Hooks" label="Hooks"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Misc._Enhancements" label="Misc. Enhancements"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Introduce_logging" label="Introduce logging"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Performance_Improvements" label="Performance Improvements"></topic>
-			<topic href="help/JGit/New_and_Noteworthy/4.0/4.0.html#Build_and_release_engineering" label="Build and release engineering"></topic>
+	<topic href="help/JGit/New_and_Noteworthy/4.1/4.1.html" label="JGit 4.1 New and Noteworthy">
+		<topic href="help/JGit/New_and_Noteworthy/4.1/4.1.html" label="JGit">
+			<topic href="help/JGit/New_and_Noteworthy/4.1/4.1.html#Basic_Support_for_Push_Certificates" label="Basic Support for Push Certificates"></topic>
+			<topic href="help/JGit/New_and_Noteworthy/4.1/4.1.html#Ignore_Handling" label="Ignore Handling"></topic>
+			<topic href="help/JGit/New_and_Noteworthy/4.1/4.1.html#Other_Enhancements" label="Other Enhancements"></topic>
+			<topic href="help/JGit/New_and_Noteworthy/4.1/4.1.html#Performance_Improvements" label="Performance Improvements"></topic>
+			<topic href="help/JGit/New_and_Noteworthy/4.1/4.1.html#Build_and_Release_Engineering" label="Build and Release Engineering"></topic>
 		</topic>
-		<topic href="help/JGit/New_and_Noteworthy/4.0/Bug-Fixes.html" label="Bug Fixes"></topic>
-		<topic href="help/JGit/New_and_Noteworthy/4.0/Contributors.html" label="Contributors"></topic>
-		<topic href="help/JGit/New_and_Noteworthy/4.0/Updating-This-Document.html" label="Updating This Document"></topic>
+		<topic href="help/JGit/New_and_Noteworthy/4.1/Bug-Fixes.html" label="Bug Fixes"></topic>
+		<topic href="help/JGit/New_and_Noteworthy/4.1/Contributors.html" label="Contributors"></topic>
+		<topic href="help/JGit/New_and_Noteworthy/4.1/Updating-This-Document.html" label="Updating This Document"></topic>
 	</topic>
 	<topic href="help/EGit/Git_For_Eclipse_Users/Git-For-Eclipse-Users.html" label="Git for Eclipse Users">
 		<topic href="help/EGit/Git_For_Eclipse_Users/Git-For-Eclipse-Users.html" label="Centralised version control systems"></topic>
@@ -499,7 +500,7 @@
 			<topic href="help/EGit/Contributor_Guide/Development-IDE-Configuration.html#Tools" label="Tools"></topic>
 			<topic href="help/EGit/Contributor_Guide/Development-IDE-Configuration.html#Java_Requirements" label="Java Requirements"></topic>
 			<topic href="help/EGit/Contributor_Guide/Development-IDE-Configuration.html#Dependencies" label="Dependencies">
-				<topic href="help/EGit/Contributor_Guide/Development-IDE-Configuration.html#Option_1:_Use_a_Target_Platform" label="Option 1: Use a Target Platform"></topic>
+				<topic href="help/EGit/Contributor_Guide/Development-IDE-Configuration.html#Option_1_.28recommended.29:_Use_a_Target_Platform" label="Option 1 (recommended): Use a Target Platform"></topic>
 				<topic href="help/EGit/Contributor_Guide/Development-IDE-Configuration.html#Option_2:_Install_from_Orbit_P2_Repository" label="Option 2: Install from Orbit P2 Repository"></topic>
 			</topic>
 			<topic href="help/EGit/Contributor_Guide/Development-IDE-Configuration.html#Running" label="Running"></topic>
@@ -531,7 +532,10 @@
 		</topic>
 		<topic href="help/EGit/Contributor_Guide/Bugs.html" label="Bugs">
 			<topic href="help/EGit/Contributor_Guide/Bugs.html#Links" label="Links">
-				<topic href="help/EGit/Contributor_Guide/Bugs.html#Filing_Bugs" label="Filing Bugs"></topic>
+				<topic href="help/EGit/Contributor_Guide/Bugs.html#Filing_Bugs" label="Filing Bugs">
+					<topic href="help/EGit/Contributor_Guide/Bugs.html#How_to_file_bugs" label="How to file bugs"></topic>
+					<topic href="help/EGit/Contributor_Guide/Bugs.html#File_a_bug" label="File a bug"></topic>
+				</topic>
 				<topic href="help/EGit/Contributor_Guide/Bugs.html#Bug_Reports_and_Links" label="Bug Reports and Links"></topic>
 			</topic>
 			<topic href="help/EGit/Contributor_Guide/Bugs.html#Keywords" label="Keywords"></topic>
-- 
2.11.4.GIT