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Merge pull request #5 from solgenomics/topic/fix_il_maps
2024-02-01
Lukas Muelle
r
Merg
e
pull request #5 from solgen
o
mics/topic/fix_il_maps
commit
|
commitdiff
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tree
2020-09-15
Lukas Muelle
r
change
genotype table
name to
phenome_genotyp
e
along
.
.
.
commit
|
commitdiff
|
tree
2020-07-02
Lukas Mueller
Merge pull requ
e
s
t
#3 from solgen
o
mics/ClayBirk
e
tt
.
.
.
commit
|
commitdiff
|
tree
2013-12-18
L
u
kas Mue
l
l
e
r
prev
e
nt un
d
efined variable errors
.
commit
|
commitdiff
|
tree
2013-07-09
Lu
k
as Muelle
r
add opt
i
on
t
o link by marker
name ins
t
ead of marke
r
.
.
.
commit
|
commitdiff
|
tree
2013-05-10
Lukas
Mueller
fix seq map
c
reat
i
o
n
, need to return m
a
p
o
bj
.
commit
|
commitdiff
|
tree
2013-05-10
Lukas Mueller
add anot
e
r
db b
a
ck
e
nd
.
commit
|
commitdiff
|
tree
2013-05-10
L
ukas Mueller
add a cacaobase specific map facto
r
y object
.
commit
|
commitdiff
|
tree
2013-05-10
Lukas Muelle
r
use acc
e
ss
o
r to set the link
instead of ov
e
rri
d
ing
.
.
.
commit
|
commitdiff
|
tree
2012-11-17
Lukas Mueller
m
ore synonym shoehorn
i
n
g
.
commit
|
commitdiff
|
tree
2012-11-17
Lukas Mueller
twea
k
o
vervie
w
to a
l
so display syno
n
ym
s
of mark
e
rs
.
commit
|
commitdiff
|
tree
2012-10-02
Lukas Mueller
fix typo t
h
at
c
aused crash
.
commit
|
commitdiff
|
tree
2012-09-29
Lu
k
a
s Mueller
c
o
de
cleanup
.
commit
|
commitdiff
|
tree
2012-09-29
L
u
k
as Mueller
fix
p
a
r
ameters
f
or
Map
F
ac
t
ory
o
bject
.
commit
|
commitdiff
|
tree
2012-09-27
Lukas
Mueller
fix
m
ap comparis
o
n tool crash
.
commit
|
commitdiff
|
tree
2012-06-15
Lukas Mu
e
ller
remove output to STDERR
.
commit
|
commitdiff
|
tree
2012-06-11
Lu
k
a
s Muel
l
er
a
dd map factory ob
j
ect
f
or cassa
v
abase
.
commit
|
commitdiff
|
tree
2012-06-11
Lu
k
as Mueller
d
on
'
t fail whe
n
A
G
P maps cannot be
c
reated
.
commit
|
commitdiff
|
tree
2012-06-11
Lu
k
as Muelle
r
fi
x
selecti
o
n of the db b
a
c
kend
.
commit
|
commitdiff
|
tree
2012-06-11
Lu
k
as
Mueller
add a
c
c
essor for the default m
a
p
.
commit
|
commitdiff
|
tree
2010-05-14
Lukas Mue
l
ler
fixed
t
h
e
o
ffset
l
abel
p
osition t
e
xt for
r
ange markers
.
commit
|
commitdiff
|
tree
2010-05-14
L
ukas Muelle
r
fixed file pat
h
s
.
nee
d
s more work
.
.
.
commit
|
commitdiff
|
tree
2010-05-13
Lukas Mueller
changed th
e
paths t
o
the files used by the
s
c
a
ffold
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Lu
k
as Mueller
a
ruler for the scaffold-bas
e
d map
s
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
removed
a c
h
romosom
e
caching
s
che
m
e tha
t
c
aused problem
s
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
setting the map
un
i
ts in the co
n
struc
t
or
commit
|
commitdiff
|
tree
2010-05-12
Lu
k
as Mueller
a
dded missing argument to
get_chro
m
osome() c
a
ll
commit
|
commitdiff
|
tree
2010-05-12
L
ukas Mueller
changed how
t
he get_markers function
w
orks in regards
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
stylistic c
h
anges
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
small changes in how units are displayed
commit
|
commitdiff
|
tree
2010-05-12
L
ukas
M
u
e
lle
r
made a s
m
al
l
a
djustment how units are dis
p
lay
e
d
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
added
s
up
p
ort for scaffold maps
commit
|
commitdiff
|
tree
2010-05-12
L
ukas Mueller
added zooming capabi
l
ity to the sc
a
ffold
m
ap
.
commit
|
commitdiff
|
tree
2010-04-30
Luk
a
s Mu
e
l
l
e
r
A chromosome
c
lass
f
o
r
sca
f
f
o
l
d
-based chromo
s
omes
.
commit
|
commitdiff
|
tree
2010-04-30
Lukas M
u
el
l
e
r
fi
x
ed
a bu
g
i
n the ch
r
omosome length calcu
l
a
tion
.
commit
|
commitdiff
|
tree
2010-04-30
Luka
s
Muell
e
r
added a function that will determine if
a rul
e
r will
.
.
.
commit
|
commitdiff
|
tree
2010-04-26
Lukas Muell
e
r
a m
a
p that
displays a scaffold-b
a
sed
m
ap from
a
n ad
.
.
.
commit
|
commitdiff
|
tree
2010-04-26
Lukas
M
u
e
ller
added support for a scaffold ma
p
(this sh
o
uld
be modif
i
ed
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lukas M
u
e
ller
fixed
t
h
e
lin
k
for the ITAG map
.
Now goes to the correc
t
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lu
k
a
s
M
u
ell
e
r
implemented the formatting of
t
he url usi
n
g a code
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
L
uka
s
Mueller
committ
i
ng
s
ome changes for
testing
o
n pg8
3
-devel
commit
|
commitdiff
|
tree
2010-04-13
Lukas Muel
l
er
adding code
f
o
r
l
inks
t
o gbrowse
2
commit
|
commitdiff
|
tree
2010-04-12
Lukas Muel
l
er
fixed a typo
commit
|
commitdiff
|
tree
2010-04-12
Lukas Mueller
removing
a prematurely comm
i
tte
d
section
commit
|
commitdiff
|
tree
2010-04-12
Lukas Mueller
attempt
to fix the maps
.
.
.
SGN::Context not yet facto
r
e
d
out
commit
|
commitdiff
|
tree
2010-04-07
Lukas
Muel
l
er
f
ixed a bug wh
i
ch
c
aused
the links to th
e
chromosome
.
.
.
commit
|
commitdiff
|
tree
2010-03-10
Lukas Mue
l
ler
fut
z
ed around
with the dependen
c
ies (somewhat ba
s
ed
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
Lu
k
as
Mueller
a
build
s
cript
f
or
the
c
vie
w
component
.
.
.
based on
.
.
.
commit
|
commitdiff
|
tree
2010-03-03
L
u
ka
s
M
u
elle
r
moving t
h
e Cview
t
est di
r
ec
t
or
i
e
s
commit
|
commitdiff
|
tree
2010-03-03
Luk
a
s Muelle
r
Remov
i
ng print STD
E
RR statements
.
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Luka
s
Mueller
remo
v
ing mis
-
placed directory
commit
|
commitdiff
|
tree
2010-03-02
L
u
kas Muelle
r
moving more stuff
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Lukas M
u
eller
moving
even mo
r
e stuff
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mueller
moving more s
t
uff
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mueller
moving stuff around
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mueller
oops, this direc
t
o
r
y
w
as missed
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
L
u
kas Mueller
Moving Cview
t
o its own comp
o
nen
t
.
commit
|
commitdiff
|
tree