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add a cacaobase specific map factory object.
2013-05-10
Lukas
M
ueller
add a cacaoba
s
e
s
pecific
m
ap fact
o
ry object
.
commit
|
commitdiff
|
tree
2013-05-10
Lukas Muelle
r
use a
c
cessor to set the link instead of overridin
g
.
.
.
commit
|
commitdiff
|
tree
2012-11-17
Lukas Mueller
more synonym sho
e
h
o
rnin
g
.
commit
|
commitdiff
|
tree
2012-11-17
Lukas Mueller
tweak
o
verview to also display syn
o
nyms of marke
r
s
.
commit
|
commitdiff
|
tree
2012-10-02
Luka
s
Mueller
fix typo tha
t
c
aused cra
s
h
.
commit
|
commitdiff
|
tree
2012-09-29
Lukas
M
ueller
code c
l
e
anup
.
commit
|
commitdiff
|
tree
2012-09-29
Lu
k
as Muel
l
er
fix param
e
ters for Ma
p
Factor
y
obje
c
t
.
commit
|
commitdiff
|
tree
2012-09-27
Lukas Mueller
f
i
x map comparison tool crash
.
commit
|
commitdiff
|
tree
2012-06-15
Lukas Muelle
r
remo
v
e
o
utpu
t
to
STDERR
.
commit
|
commitdiff
|
tree
2012-06-11
Luk
a
s Mueller
ad
d
map
f
actory ob
j
ect for cassav
a
base
.
commit
|
commitdiff
|
tree
2012-06-11
Lukas Mueller
do
n
't
f
a
il when AG
P
maps cannot be created
.
commit
|
commitdiff
|
tree
2012-06-11
L
ukas M
u
eller
fix selection of t
h
e db
b
a
ckend
.
commit
|
commitdiff
|
tree
2012-06-11
Lukas
M
u
e
l
le
r
add accessor for t
h
e
d
efault ma
p
.
commit
|
commitdiff
|
tree
2010-05-14
Lukas Mueller
fixe
d
the of
f
set l
a
b
el positio
n
text for rang
e
m
arkers
.
commit
|
commitdiff
|
tree
2010-05-14
Lukas Muel
l
er
fi
x
ed file pat
h
s
.
needs
m
ore work
.
.
.
commit
|
commitdiff
|
tree
2010-05-13
Lukas Mueller
ch
a
nged the paths to
the
f
iles
u
sed by
t
he scaffold
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Luk
a
s
Mue
l
ler
a
r
u
l
e
r
for the sca
f
fold-based maps
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
remov
e
d
a chro
m
osome caching scheme that caused problems
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
setting the map units in the const
r
uc
t
or
commit
|
commitdiff
|
tree
2010-05-12
Lu
k
as Mueller
ad
d
ed missing ar
g
ument to get_c
h
r
o
mosome() call
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mueller
changed how the get_markers function work
s
in regard
s
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
L
u
ka
s
Mueller
s
t
ylistic changes
.
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mu
e
ller
small cha
n
ges
i
n how units are d
i
splayed
commit
|
commitdiff
|
tree
2010-05-12
L
u
kas Muel
l
er
made a small
a
d
j
ustment
how units a
r
e
di
s
play
e
d
commit
|
commitdiff
|
tree
2010-05-12
Lukas Mue
l
l
er
ad
d
ed su
p
po
r
t
f
or scaffold maps
commit
|
commitdiff
|
tree
2010-05-12
Lukas M
u
eller
added zooming capability to t
h
e scaffold map
.
commit
|
commitdiff
|
tree
2010-04-30
L
u
k
a
s
Muel
l
er
A ch
r
omosome cl
a
ss for scaff
o
ld-based ch
r
omoso
m
es
.
commit
|
commitdiff
|
tree
2010-04-30
Luka
s
Mueller
f
i
xed a bug in
t
he chromosome length calcula
t
ion
.
commit
|
commitdiff
|
tree
2010-04-30
Lukas Mueller
added a
f
un
c
tion that will determine
i
f a r
u
ler will
.
.
.
commit
|
commitdiff
|
tree
2010-04-26
Luk
a
s Muel
l
er
a map that
displays a scaffold
-
b
a
s
e
d
map from
a
n ad
.
.
.
commit
|
commitdiff
|
tree
2010-04-26
Lukas Muelle
r
added support for a scaffold
m
ap (this sh
o
uld be
modified
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lukas Mueller
fi
x
ed the
l
in
k
f
or the
I
TA
G
map
.
Now goes to the correct
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lukas Mue
l
le
r
implemented the formatting
of th
e
u
r
l u
s
ing a code
.
.
.
commit
|
commitdiff
|
tree
2010-04-14
Lukas
M
ueller
c
om
m
i
tting so
m
e c
h
anges
f
o
r
testing on pg83-devel
commit
|
commitdiff
|
tree
2010-04-13
Lukas M
u
e
l
ler
adding code for links
to gbrowse2
commit
|
commitdiff
|
tree
2010-04-12
Lu
k
as Mu
e
l
ler
fix
e
d a typo
commit
|
commitdiff
|
tree
2010-04-12
Lukas Mueller
removing a prematurely co
m
mitt
e
d section
commit
|
commitdiff
|
tree
2010-04-12
Lukas Mueller
a
t
tempt
t
o
fix the
maps
.
.
.
SGN::Context not yet
factored
o
ut
commit
|
commitdiff
|
tree
2010-04-07
Lukas Mueller
fixed a bug w
h
ich ca
u
sed t
h
e links
t
o the ch
r
o
m
o
s
ome
.
.
.
commit
|
commitdiff
|
tree
2010-03-10
Lukas Muell
e
r
futzed
a
r
ou
n
d with th
e
de
p
e
n
d
en
c
ies (somewhat
ba
s
ed
.
.
.
commit
|
commitdiff
|
tree
2010-03-05
Lukas Muel
l
e
r
a build
s
c
r
i
pt f
o
r th
e
c
v
i
e
w component
.
.
.
based
on
.
.
.
commit
|
commitdiff
|
tree
2010-03-03
Lukas Mueller
moving
the Cvi
e
w test d
i
rectories
commit
|
commitdiff
|
tree
2010-03-03
Lukas Muel
l
er
Removing print STDERR statements
.
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Lukas
Mueller
remov
i
ng mis-placed director
y
commit
|
commitdiff
|
tree
2010-03-02
Lukas
Muell
e
r
movi
n
g more s
t
u
f
f
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mueller
moving eve
n
more s
t
uff
commit
|
commitdiff
|
tree
2010-03-02
L
ukas M
u
e
ller
moving more stuff
commit
|
commitdiff
|
tree
2010-03-02
L
ukas Mueller
moving stuff around
commit
|
commitdiff
|
tree
2010-03-02
Luka
s
Mue
l
le
r
oops,
t
his directory was m
i
ssed
.
.
.
commit
|
commitdiff
|
tree
2010-03-02
Lukas Mueller
Moving Cvie
w
to its
o
wn co
m
ponent
.
commit
|
commitdiff
|
tree