From f6cebbcdf96ac3010218ac0b2213a36277d15d64 Mon Sep 17 00:00:00 2001 From: Chris Fields Date: Wed, 20 Apr 2011 16:35:26 -0500 Subject: [PATCH] some more Changes --- Changes | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/Changes b/Changes index ba91d6d..c6c8dc2 100644 --- a/Changes +++ b/Changes @@ -6,9 +6,14 @@ http://www.bioperl.org/wiki/Change_log 1.6.900 +* PAML codeml wrapper updated to work with PAML 4.4d [DaveMessina] * Initial BLAST+ modules (Bio::Tools::Run::BlastPlus/StandAloneBlastPlus) [maj] +* Bowtie and BWA wrappers for NGS [maj, Ben Bimber, Dan Kortschak] * Improved Bio::Tools::Run::AssemblerBase module and update of the wrappers that use it [fangly, maj] +* ClustalW v2 support [cjfields] +* tRNAscanSE support [Mark Johnson, cjfields] +* Glimmer v2 updates [Mark Johnson, cjfields] * Support for running new de novo and comparative assemblers: 454 Newbler [fangly], Minimo [fangly], Maq [maj], Samtools [maj], Bowtie [maj] * [bug 2728] add support to Bio::Tools::Run::Alignment::ClustalW for ClustalW2 -- 2.11.4.GIT