Build.PL

   1 #!/usr/bin/perl -w
   2
   3 # This is a Module::Build script for BioPerl-Run installation.
   4 # See http://search.cpan.org/~kwilliams/Module-Build/lib/Module/Build.pm
   5
   6 use strict;
   7 use warnings;
   8 use Module::Build;
   9
  10 my $build = Module::Build->new(
  11     dist_name           => 'BioPerl-Run',
  12     dist_version        => '1.006900',
  13     module_name         => 'Bio::Run',
  14     dist_author         => 'BioPerl Team <bioperl-l@bioperl.org>',
  15     dist_abstract       => 'BioPerl-Run - wrapper toolkit',
  16     license             => 'perl',
  17     requires            => {
  18                             'perl'               => '5.6.1',
  19                             'Bio::Root::Version' => '1.006900'
  20                            },
  21     recommends          => {
  22                             'Algorithm::Diff'    => 0, # generating consensus protein family descriptions: Bio::Tools::Run::TribeMCL
  23                             'IPC::Run'           => 0, # Glimmer and Genemark application wrappers: Bio::Tools::Run::Glimmer Bio::Tools::Run::Genemark
  24                             'IO::String'         => 0, # generating Bio::Tree::Tree from strings: Bio::Tools::Run::Phylo::Phylip::Consense
  25                             'XML::Twig'          => 0, # processing XML data: Bio::Tools::Run::EMBOSSacd
  26                             'File::Sort'         => 0, # BEDTools
  27                             'Config::Any'        => 0  # MCS, Match
  28                            },
  29     get_options         => {
  30                             accept  => { },
  31                             network => { },
  32                             install_scripts => { }
  33                            },
  34     auto_features       => {
  35                             Network => {
  36                                         description => "Enable tests that need an internet connection",
  37                                         requires    => { 'LWP::UserAgent' => 0 }
  38                                        }
  39                            },
  40     dynamic_config      => 1,
  41     #create_makefile_pl  => 'passthrough'
  42 );
  43
  44 my $accept = $build->args->{accept};
  45
  46 # Optionally have script files installed.
  47 if ($build->args('install_scripts') or $accept ? 0 : $build->y_n("Install scripts? y/n", 'n')) {
  48     my $files = $build->_find_file_by_type('PLS', 'scripts');
  49
  50     my $script_build = File::Spec->catdir($build->blib, 'script');
  51
  52     my @tobp;
  53     while (my ($file, $dest) = each %$files) {
  54         $dest = 'bp_'.File::Basename::basename($dest);
  55         $dest =~ s/PLS$/pl/;
  56         $dest = File::Spec->catfile($script_build, $dest);
  57         $build->copy_if_modified(from => $file, to => $dest);
  58         push @tobp, $dest;
  59     }
  60
  61     $build->script_files(\@tobp);
  62 }
  63
  64 # Do network tests?
  65 my $do_network_tests = 0;
  66 if ($build->args('network')) {
  67     $do_network_tests = $build->feature('Network');
  68 }
  69 elsif ($build->feature('Network')) {
  70     $do_network_tests = $accept ? 0 : $build->y_n("Do you want to run tests that require connection to servers across the internet\n(likely to cause some failures)? y/n", 'n');
  71 }
  72
  73 if ($do_network_tests) {
  74     $build->notes(network => 1);
  75     $build->log_info("  - will run internet-requiring tests\n");
  76     my $use_email = $build->y_n("Do you want to run tests requiring a valid email address? y/n",'n');
  77     if ($use_email) {
  78         my $address = $build->prompt("Enter email address:");
  79         $build->notes(email => $address);
  80     }
  81 }
  82 else {
  83     $build->notes(network => 0);
  84     $build->log_info("  - will not run internet-requiring tests\n");
  85 }
  86
  87 # Create the build script and exit
  88 $build->create_build_script;
  89
  90 exit;