Fixed messed up decision whether or not to guess the alphabet.
tree7a66ab4c63a52f80cc15c2cfb2f6227273773a52
-rw-r--r-- 2317 AUTHORS
-rw-r--r-- 2690 BUGS
drwxr-xr-x - Bio
-rw-r--r-- 22764 Changes
-rw-r--r-- 426 DEPRECATED
-rw-r--r-- 18521 FAQ
-rw-r--r-- 14396 INSTALL
-rw-r--r-- 6321 LICENSE
-rw-r--r-- 90 MANIFEST.SKIP
-rwxr-xr-x 9226 Makefile.PL
-rw-r--r-- 3500 PLATFORMS
-rw-r--r-- 5775 README
-rw-r--r-- 7791 biodatabases.pod
-rw-r--r-- 17798 biodesign.pod
-rw-r--r-- 7572 bioperl.lisp
-rw-r--r-- 8300 bioperl.pod
-rwxr-xr-x 8181 bioscripts.pod
-rwxr-xr-x 147736 bptutorial.pl
drwxr-xr-x - doc
drwxr-xr-x - examples
drwxr-xr-x - models
drwxr-xr-x - scripts
drwxr-xr-x - t