| 2011-06-20 |
GitHub Merge... | Merge b4b30a8a0de6c58963a48519b8c33f6ea482c03f into... 16/merge |
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| 2011-06-20 |
Chad Davis | Tests for Bio::Simple::Align::consensus_conservation()16/head |
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| 2011-06-17 |
Chad Davis | Added Bio::SimpleAlign::consensus_conservation() |
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| 2011-06-16 |
Chris Fields | turn off explicit warnings for windows users (needs... |
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| 2011-06-16 |
Chris Fields | only add \x01 if prior line doesn't end in a space... |
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| 2011-06-16 |
Chris Fields | updates for last two bug fixes |
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| 2011-06-16 |
Chris Fields | * Address problem when accessing schema via GBrowse2... |
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| 2011-06-16 |
Chris Fields | braino |
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| 2011-06-16 |
Chris Fields | * add code to Bio::DB::Fasta that allows blank lines... |
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| 2011-06-16 |
Chris Fields | that should have been, "fixes bug # 3240", :P |
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| 2011-06-16 |
Chris Fields | add last fix to changes |
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| 2011-06-16 |
Chris Fields | * remove overly-protective grouping, which was causing... |
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| 2011-06-13 |
Chris Fields | doc patch, fixes bug #3250 |
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| 2011-06-02 |
Chris Fields | Merge pull request #15 from tupinek/master |
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| 2011-06-02 |
Michal Špaček | Fix test in other locale then C (or like en).15/head |
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| 2011-05-26 |
hyphaltip | warn about the particular ID that doesn't exist |
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| 2011-05-25 |
Jonathan "Duke... | Merge branch 'topic/leto_path_class' |
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| 2011-05-25 |
Lincoln Stein | Merge branch 'master' of github.com:bioperl/bioperl... |
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| 2011-05-25 |
Lincoln Stein | fix broken types() method in SeqFeature::Store memory... |
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| 2011-05-25 |
Lincoln Stein | fix broken types() method |
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| 2011-05-24 |
hyphaltip | Merge branch 'master' of github.com:bioperl/bioperl... |
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| 2011-05-24 |
hyphaltip | cmdline example should have format for -sf option |
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| 2011-05-19 |
Jonathan "Duke... | Add more tests for Bio::SearchIO + Path::Class objects |
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| 2011-05-19 |
Jonathan "Duke... | Add some tests for Bio::SearchIO->new understanding... |
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| 2011-05-19 |
Jonathan "Duke... | Add warnings to t/SearchIO/blast.t |
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| 2011-05-19 |
Jonathan "Duke... | Perltidy t/SearchIO/blast.t, no functional changes |
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| 2011-05-19 |
Jonathan "Duke... | Add some tests for Bio::Root::IO->new taking Path:... |
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| 2011-05-19 |
Jonathan "Duke... | With little effort, our hero valiantly slays THE DEPEND... |
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| 2011-05-19 |
Chris Fields | run this in an eval block; tests are still failing... |
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| 2011-05-19 |
DaveMessina | - now actually checking if executable was found (and... |
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| 2011-05-19 |
Chris Fields | perl 5.14.0 not pending anymorebioperl-release-1-6-901 |
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| 2011-05-19 |
Chris Fields | Ace is deprecated, per LDS, not supported anymore,... |
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| 2011-05-19 |
Chris Fields | add notes about recent fix, and actually change date |
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| 2011-05-19 |
Chris Fields | add a few changes |
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| 2011-05-19 |
Chris Fields | uncomment versioning code, which sets the version in... |
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| 2011-05-17 |
Aaron J. Mackey | oops, didn't mean to change the new bug website |
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| 2011-05-17 |
ajm6q | more updates to handle FASTA 3.6 multi-HSP hits |
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| 2011-05-10 |
Chris Fields | fix spelling errors, fixes #3228 |
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| 2011-05-09 |
Chris Fields | strip out -w flag (see perllexwarn as to why setting... |
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| 2011-05-04 |
Chris Fields | deal with small change in # of contigs returned with... |
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| 2011-05-04 |
Chris Fields | see if we can make PAUSE skip indexing these modules |
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| 2011-05-04 |
Chris Fields | only allow defined data, otherwise nastiness may ensue |
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| 2011-05-04 |
Chris Fields | added suggested change by John Anderson (genehack)... |
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| 2011-05-04 |
Chris Fields | a few more updates |
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| 2011-05-04 |
Chris Fields | remove -w flag (windows, may follow suit with others) |
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| 2011-05-04 |
Chris Fields | add skips and a warning re: NeXML v0.9 support |
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| 2011-05-04 |
Chris Fields | more Changes |
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| 2011-05-04 |
Chris Fields | more deprecated code removal; squash test failing due... |
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| 2011-05-04 |
Chris Fields | XML::Parser::PerlSAX required for these tests |
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| 2011-05-04 |
Chris Fields | Use of qw(...) as parentheses is deprecated with perl... |
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| 2011-05-04 |
Chris Fields | update Changes |
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| 2011-05-04 |
Chris Fields | bump version |
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| 2011-04-29 |
Jonathan "Duke... | Merge branch 'topic/bio_coord_pair_tests' |
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| 2011-04-29 |
Dan Bolser | Adding some tests for Bio::Coordinate::Pair, showing... |
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| 2011-04-22 |
Robert Buels | tweak BDB::SF::Store Pg backend indexing again. some... |
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| 2011-04-19 |
Chris Fields | add some comments |
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| 2011-04-19 |
Chris Fields | NeXML problems also with Bio::AlignIO::nexml, refs... |
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| 2011-04-19 |
Chris Fields | fixes for missing DBI, gbxml reliance on XML::SAX,... |
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| 2011-04-19 |
Chris Fields | Bio::SeqIO::nexml doesn't work with NeXML v0.9 yet... |
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| 2011-04-18 |
Chris Fields | add updated file for NeXML tree parsing, refs #3207 |
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| 2011-04-14 |
Chris Fields | finish Changes |
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| 2011-04-14 |
Chris Fields | we are grown-ups now, don't need a passthrough Makefile.PL |
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| 2011-04-14 |
Chris Fields | work on updates for release |
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| 2011-04-14 |
Chris Fields | don't run DB::Taxonomy test w/o XML::Twig |
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| 2011-04-14 |
Chris Fields | no need to print these out to a file, we just store... |
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| 2011-04-14 |
Chris Fields | no need to print out files, these are in the dist already |
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| 2011-04-13 |
Chris Fields | partly squash Assembly warnings |
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| 2011-04-13 |
Chris Fields | formatting again for warning |
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| 2011-04-13 |
Chris Fields | remove redundant tests per Dave Messina |
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| 2011-04-13 |
Chris Fields | add some spacing for warning |
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| 2011-04-13 |
Chris Fields | parameter missing actual argument |
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| 2011-04-13 |
Chris Fields | catch missing EntrezGene and warn re: circ dependency |
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| 2011-04-13 |
Chris Fields | MANIFEST is created dynamically, we leave MANIFEST... |
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| 2011-04-13 |
Chris Fields | add a few things to skip that are possibly created... |
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| 2011-04-13 |
Chris Fields | add back MANIFEST.SKIP; we have a few test files create... |
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| 2011-04-13 |
Chris Fields | Revert "remove MANIFEST/MANIFEST.SKIP (only need for... |
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| 2011-04-13 |
Chris Fields | typo |
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| 2011-04-13 |
Chris Fields | fix skip test count (off by 1) |
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| 2011-04-13 |
Chris Fields | Merge branch 'topic/bug_3196', fixes #3196 but needs... |
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| 2011-04-13 |
Chris Fields | Merge remote branch 'wkretzsch/master' |
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| 2011-04-13 |
Chris Fields | TODO failing test per bug #3204 |
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| 2011-04-13 |
Chris Fields | fix typo |
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| 2011-04-13 |
Dan Bolser | minor bugfix on my previous commit (why did I push\?)13/head |
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| 2011-04-13 |
Dan Bolser | changing manifest to reflect my file renaming |
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| 2011-04-13 |
Dan Bolser | added 'usage' section using pod2usage12/head |
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| 2011-04-13 |
Dan Bolser | changing directory name to be consistent with the others |
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| 2011-04-13 |
Dan Bolser | fixing a documentation bug |
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| 2011-04-12 |
hyphaltip | small doc change |
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| 2011-04-12 |
hyphaltip | Merge branch 'master' of github.com:bioperl/bioperl... |
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| 2011-04-12 |
hyphaltip | revert throw statment that was preventing default STDOU... |
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| 2011-04-12 |
Chris Fields | remove MANIFEST/MANIFEST.SKIP (only need for dist release) |
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| 2011-04-12 |
Chris Fields | continue the subtle dismantling of Bio::Root::Build... |
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| 2011-04-12 |
Chris Fields | some comments on the general state of things re: Bio... |
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| 2011-04-12 |
Chris Fields | * git rid of post-install step (see what I did there?) |
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| 2011-04-12 |
Chris Fields | mv netinstaller to bp_* and change docs accordingly |
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| 2011-04-12 |
Chris Fields | mv netinstall to utilities folder |
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| 2011-04-12 |
Chris Fields | squash local warnings |
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| 2011-04-12 |
Chris Fields | default to memory if the adaptor is SQLite |
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| 2011-04-12 |
Chris Fields | set up some specific cleanup steps for us |
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| 2011-04-12 |
Chris Fields | * Get basic tests and other Build.PL features working |
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