| 2013-07-12 |
Florent Angly | Use a default format for as_string
|
commit | commitdiff | tree |
| 2013-07-12 |
Florent Angly | Test uses species, not intermediary node
|
commit | commitdiff | tree |
| 2013-07-12 |
Florent Angly | Avoid use of an undefined value as an ARRAY reference
|
commit | commitdiff | tree |
| 2013-07-12 |
Florent Angly | Use list context instead of scalar context to include...
|
commit | commitdiff | tree |
| 2013-07-12 |
Florent Angly | Fixed POD indentation
|
commit | commitdiff | tree |
| 2013-07-12 |
Florent Angly | Tests for Bio::Taxonomy::get_tree
|
commit | commitdiff | tree |
| 2013-07-12 |
Chris Fields | update tests for perl 5.18
|
commit | commitdiff | tree |
| 2013-07-12 |
hyphaltip | make explicit
|
commit | commitdiff | tree |
| 2013-07-12 |
Brian Osborne | Bug 3415
|
commit | commitdiff | tree |
| 2013-07-12 |
Carnë Draug | maint: remove hard tabs and trailing whitespace
|
commit | commitdiff | tree |
| 2013-07-12 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2013-07-12 |
Brian Osborne | Add dna_to_aa_aln method and tests
|
commit | commitdiff | tree |
| 2013-07-12 |
Carnë Draug | Annotation: fix typo on test
|
commit | commitdiff | tree |
| 2013-07-12 |
Carnë Draug | Bio::Cluster::SequenceFamily - bug fixes and performance
|
commit | commitdiff | tree |
| 2013-07-12 |
Brian Osborne | Add support for version 4, all tests pass
|
commit | commitdiff | tree |
| 2013-07-11 |
hyphaltip | missing request for marker name in the call
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | recover GenericWebAgent from Bio-EUtilities
|
commit | commitdiff | tree |
| 2013-07-11 |
Benjamin Vaisvil | Per: http://www.bioperl.org/wiki/Bioperl_Best_Practices and
|
commit | commitdiff | tree |
| 2013-07-11 |
Benjamin Vaisvil | fix conflict
|
commit | commitdiff | tree |
| 2013-07-11 |
Benjamin Vaisvil | typo, removed ->
|
commit | commitdiff | tree |
| 2013-07-11 |
Brian Osborne | Bio::AlignIO::fasta was not always using />\s*(\S+...
|
commit | commitdiff | tree |
| 2013-07-11 |
Francisco J. Ossandon | Fix for Bug #3251, plus fixed a couple of regular expression...
|
commit | commitdiff | tree |
| 2013-07-11 |
Francisco J. Ossandon | Revert "Fixed no-hit blast bug and faulty regexs, added...
|
commit | commitdiff | tree |
| 2013-07-11 |
unknown | Fixed no-hit blast bug and faulty regexs, added tests
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | Bio::Perl - fix indentation (remove tabs, and weird...
|
commit | commitdiff | tree |
| 2013-07-11 |
Paul Cantalupo | updating Changes file
|
commit | commitdiff | tree |
| 2013-07-11 |
Paul Cantalupo | Merge branch 'topic/bug3302'
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | Don't use a separate default scalar when there's a...
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | follow perl recommendations:
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | fix indentation (remove tabs, and weird 3 spaces indentation)
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | follow perl recommendations:
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | use until instead of while(1){last if...}
|
commit | commitdiff | tree |
| 2013-07-11 |
Carnë Draug | fix indentation (remove tabs, 3 space and 2 space indentation)
|
commit | commitdiff | tree |
| 2013-07-11 |
Paul Cantalupo | fixing bug 3421 and adding test (hmmer2 now correctly...
|
commit | commitdiff | tree |
| 2013-07-11 |
Florent Angly | More thoroughly documented options and defaults
|
commit | commitdiff | tree |
| 2013-07-11 |
Florent Angly | Restoring intended behaviour... I think
|
commit | commitdiff | tree |
| 2013-07-11 |
Florent Angly | Fixed failing DBD test
|
commit | commitdiff | tree |
| 2013-04-18 |
Chris Fields | Merge pull request #56 from wkretzsch/v1
|
commit | commitdiff | tree |
| 2013-02-20 |
Chris Fields | add test and TODO for Issue #3416
|
commit | commitdiff | tree |
| 2013-02-20 |
Chris Fields | accession no longer valid, using updated one
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | squash another warning from Graph module oddities
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | fix problems with remote data changes
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | LOCUS IDs no longer work, bad for swissprot-like IDs...
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | fix ID example
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | MUSIGHBA1 no longer works as a primary ID, LOCUS apparently...
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | bulletproof test against remote data changes
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | squash warning
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | squash warning
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | HTML table parsing requires UTF8 decoding
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | Graph::Directed is giving warnings when using 'require...
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | squash warning
|
commit | commitdiff | tree |
| 2013-02-19 |
Chris Fields | add v1 branch for CI
|
commit | commitdiff | tree |
| 2013-02-06 |
Chris Fields | fix for bug #3410
|
commit | commitdiff | tree |
| 2012-11-26 |
Chris Fields | allow additional nuc IUPAC when guessing, this was...
|
commit | commitdiff | tree |
| 2012-11-04 |
Chris Fields | BLAST XML not allowing custom search handlers, fix...
|
commit | commitdiff | tree |
| 2012-10-03 |
Chris Fields | fix deprecated usage warnings for perl 5.16
|
commit | commitdiff | tree |
| 2012-10-03 |
Chris Fields | add Bio::ASN1::EntrezGene
|
commit | commitdiff | tree |
| 2012-10-03 |
Chris Fields | comment out vestigial commit(), tests now pass
|
commit | commitdiff | tree |
| 2012-10-02 |
Chris Fields | Should run check if SQLite or Pg drivers present
|
commit | commitdiff | tree |
| 2012-10-02 |
Chris Fields | Only commit if AutoCommit is off
|
commit | commitdiff | tree |
| 2012-10-02 |
Chris Fields | clean up last commit a little
|
commit | commitdiff | tree |
| 2012-10-02 |
Chris Fields | returning undef to an array still creates an array...
|
commit | commitdiff | tree |
| 2012-10-02 |
Chris Fields | mysql => Pg
|
commit | commitdiff | tree |
| 2012-10-01 |
Chris Fields | um, when did IndexedBase come about? Fix to address...
|
commit | commitdiff | tree |
| 2012-10-01 |
Chris Fields | fix text fail if HTML::TableExtract isn't present
|
commit | commitdiff | tree |
| 2012-10-01 |
Chris Fields | squash a couple of warnings with more recent versions...
|
commit | commitdiff | tree |
| 2012-08-25 |
Chris Fields | Revert "Fix for correctly parsing phylip format with...
|
commit | commitdiff | tree |
| 2012-08-24 |
Chris Fields | Merge pull request #39 from daisieh/bug3331
|
commit | commitdiff | tree |
| 2012-08-24 |
Chris Fields | Merge pull request #40 from cwittmer/master
|
commit | commitdiff | tree |
| 2012-07-27 |
Chris Fields | test Bio::Phylo and Bio::ASN1::EntrezGene deps
|
commit | commitdiff | tree |
| 2012-07-27 |
Chris Fields | add whitelist, switch to master (this disappeared somewhere...
|
commit | commitdiff | tree |
| 2012-07-27 |
Chris Fields | test libxml dep
|
commit | commitdiff | tree |
| 2012-07-27 |
Chris Fields | consolidate cpanm params
|
commit | commitdiff | tree |
| 2012-07-26 |
Chris Fields | test GD again
|
commit | commitdiff | tree |
| 2012-07-26 |
Chris Fields | older version of peterjc's .travis.yml, see if this...
|
commit | commitdiff | tree |
| 2012-07-26 |
Chris Fields | fix some yaml
|
commit | commitdiff | tree |
| 2012-07-26 |
Chris Fields | merge Peter's changes in
|
commit | commitdiff | tree |
| 2012-07-25 |
Chris Fields | test travis
|
commit | commitdiff | tree |
| 2012-07-25 |
Chris Fields | add a comment
|
commit | commitdiff | tree |
| 2012-07-09 |
Chris Fields | Merge branch 'topic/eutils-migration'
|
commit | commitdiff | tree |
| 2012-05-27 |
Chris Fields | bad option fixed, patch courtesy Peter van Heusden
|
commit | commitdiff | tree |
| 2012-05-26 |
Chris Fields | Merge pull request #34 from TristanLefebure/codonbs
|
commit | commitdiff | tree |
| 2012-05-10 |
Chris Fields | change \W+ tp \s+, allows gaps (per Tim White)
|
commit | commitdiff | tree |
| 2012-04-10 |
Chris Fields | Roy's patches for Bio::SeqUtils, addresses bug #3339
|
commit | commitdiff | tree |
| 2012-03-21 |
Chris Fields | remove remote eutil tests
|
commit | commitdiff | tree |
| 2012-03-21 |
Chris Fields | remove EUtilities data
|
commit | commitdiff | tree |
| 2012-03-21 |
Chris Fields | remove EUtilities, now exists as a separate repo
|
commit | commitdiff | tree |
| 2012-03-14 |
Chris Fields | remove module, no longer needed due to Graph version...
|
commit | commitdiff | tree |
| 2012-03-13 |
Chris Fields | add some documentation indicating change
|
commit | commitdiff | tree |
| 2012-03-13 |
Chris Fields | require Graph >= 0.5
|
commit | commitdiff | tree |
| 2012-03-13 |
Chris Fields | silence subroutine warning from redefinition
|
commit | commitdiff | tree |
| 2012-03-01 |
Chris Fields | um, remove that $Id tag thingy
|
commit | commitdiff | tree |
| 2012-03-01 |
Chris Fields | test commit 3, checking bp-guts mail
|
commit | commitdiff | tree |
| 2012-03-01 |
Chris Fields | test commit 2, checking bp-guts mail
|
commit | commitdiff | tree |
| 2012-03-01 |
Chris Fields | test commit, checking bp-guts mail
|
commit | commitdiff | tree |
| 2012-02-08 |
Chris Fields | remove Id tag
|
commit | commitdiff | tree |
| 2012-01-21 |
Chris Fields | Merge pull request #32 from fschwach/master
|
commit | commitdiff | tree |
| 2012-01-13 |
Chris Fields | Merge pull request #31 from fschwach/master
|
commit | commitdiff | tree |
| 2012-01-06 |
Chris Fields | typo, reported by Doug Foxvog, relayed via amackey
|
commit | commitdiff | tree |
| 2011-12-15 |
Chris Fields | TableParser -> TableExtract
|
commit | commitdiff | tree |
