| 2006-11-08 |
cjfields | Some modules don't define VERSION, default to 0
|
commit | commitdiff | tree |
| 2006-11-08 |
cjfields | Remove extraneous debugging staatements
|
commit | commitdiff | tree |
| 2006-11-08 |
cjfields | typo
|
commit | commitdiff | tree |
| 2006-11-08 |
cjfields | Using DBLinks for database refs
|
commit | commitdiff | tree |
| 2006-11-07 |
cjfields | Additional fun stuff; write_aln() test added; may move...
|
commit | commitdiff | tree |
| 2006-11-06 |
cjfields | more Stockholm tests; skipping two for now (dropping...
|
commit | commitdiff | tree |
| 2006-11-06 |
cjfields | Add alignment meta string output
|
commit | commitdiff | tree |
| 2006-11-06 |
cjfields | remove old initialization parameter; will add builder...
|
commit | commitdiff | tree |
| 2006-11-06 |
cjfields | Add sequence-based meta output
|
commit | commitdiff | tree |
| 2006-11-06 |
cjfields | stockholm alignment tests
|
commit | commitdiff | tree |
| 2006-11-06 |
cjfields | Add experimental stockholm write_aln() support
|
commit | commitdiff | tree |
| 2006-11-05 |
cjfields | Use Test::More
|
commit | commitdiff | tree |
| 2006-11-01 |
cjfields | Implement AnnotatableI (for alignment-specific annotation)
|
commit | commitdiff | tree |
| 2006-10-31 |
cjfields | remove redundant sub_Location_by_order()
|
commit | commitdiff | tree |
| 2006-10-31 |
cjfields | Bug 2130
|
commit | commitdiff | tree |
| 2006-10-28 |
cjfields | remove extraneous use statement
|
commit | commitdiff | tree |
| 2006-10-26 |
cjfields | Bullet-proof some tests
|
commit | commitdiff | tree |
| 2006-10-24 |
cjfields | Bug 2060
|
commit | commitdiff | tree |
| 2006-10-24 |
cjfields | our $VERSION (perl 5.6.1-ish)
|
commit | commitdiff | tree |
| 2006-10-20 |
cjfields | Typo
|
commit | commitdiff | tree |
| 2006-10-19 |
cjfields | Bug 2101 (tentative fix)
|
commit | commitdiff | tree |
| 2006-10-17 |
cjfields | Change to Test::More; skip XML tests if problems arise...
|
commit | commitdiff | tree |
| 2006-10-11 |
cjfields | Bug 2121
|
commit | commitdiff | tree |
| 2006-10-10 |
cjfields | Bug 2120
|
commit | commitdiff | tree |
| 2006-10-05 |
cjfields | Updates to POD and egquery (getting it up to speed)
|
commit | commitdiff | tree |
| 2006-10-05 |
cjfields | Fixes to get EGQuery working correctly
|
commit | commitdiff | tree |
| 2006-10-04 |
cjfields | Added tests for new DocSum methods; will probably cut...
|
commit | commitdiff | tree |
| 2006-10-04 |
cjfields | POD cleanup (thanks Sendu), remove some debugging stuff...
|
commit | commitdiff | tree |
| 2006-10-04 |
cjfields | ESummary tests
|
commit | commitdiff | tree |
| 2006-10-04 |
cjfields | Fixes for tests
|
commit | commitdiff | tree |
| 2006-10-03 |
cjfields | About to add a few tests for Esummary (not implemented...
|
commit | commitdiff | tree |
| 2006-10-03 |
cjfields | Add POD
|
commit | commitdiff | tree |
| 2006-10-03 |
cjfields | Adding methods to DocSum and esummary (still experimental)
|
commit | commitdiff | tree |
| 2006-10-03 |
cjfields | Add simple docsum container object for esummary
|
commit | commitdiff | tree |
| 2006-10-03 |
cjfields | Setting DB from cookie is bad for elink; it should...
|
commit | commitdiff | tree |
| 2006-10-03 |
cjfields | Force IDs to be an array at all times
|
commit | commitdiff | tree |
| 2006-10-03 |
cjfields | Remove tests for deprecated modules
|
commit | commitdiff | tree |
| 2006-10-02 |
cjfields | warn, not warning (duh....)
|
commit | commitdiff | tree |
| 2006-10-02 |
cjfields | Added more deprecated modules
|
commit | commitdiff | tree |
| 2006-10-02 |
cjfields | Add deprecation warnings
|
commit | commitdiff | tree |
| 2006-10-02 |
cjfields | Add link not present from wiki2txt conversion
|
commit | commitdiff | tree |
| 2006-10-02 |
cjfields | Update to include Torsten's wiki changes for http_proxy
|
commit | commitdiff | tree |
| 2006-09-29 |
cjfields | remove numbers in contents
|
commit | commitdiff | tree |
| 2006-09-29 |
cjfields | First draft of new INSTALL (from wiki)
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | Remove extra quote
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | now with 'our'
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | Add proxy authorization, small fixes to POD
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | Pass to SUPER::proxy (bug 2109)
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | Did I forget to mention, now with Test::More? Small...
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | Minor changes (deal with evalue perliness)
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | Add ERPIN tests
|
commit | commitdiff | tree |
| 2006-09-28 |
cjfields | for ERPIN tests
|
commit | commitdiff | tree |
| 2006-09-27 |
cjfields | change use var to our; comment out Dumper lines
|
commit | commitdiff | tree |
| 2006-09-27 |
cjfields | convert use vars to our; small bugfix for 2101-
|
commit | commitdiff | tree |
| 2006-09-26 |
cjfields | Actually, follow Sendu's advise and make the test more...
|
commit | commitdiff | tree |
| 2006-09-26 |
cjfields | NCBI added 'toolkit' as a db
|
commit | commitdiff | tree |
| 2006-09-26 |
cjfields | Bug 2108
|
commit | commitdiff | tree |
| 2006-09-25 |
cjfields | Saved too early; added regex for win32
|
commit | commitdiff | tree |
| 2006-09-25 |
cjfields | Fix BioDBSeqfeature bug; passes tests, but still have...
|
commit | commitdiff | tree |
| 2006-09-25 |
cjfields | bug 2099
|
commit | commitdiff | tree |
| 2006-09-25 |
cjfields | Bug 2104, may be rolled back if tests on other OS's...
|
commit | commitdiff | tree |
| 2006-09-21 |
cjfields | Bug 2106
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | Change # of skipped tests w/o IO::String
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | Now with More (Test::More, that is)
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | have NAME match module
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | *** empty log message ***
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | have NAME match module
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | have NAME match module
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | have NAME match module
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | have NAME match module
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | have NAME match module
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | Get rid of $&
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | Get rid of $`,$&
|
commit | commitdiff | tree |
| 2006-09-20 |
cjfields | Get rid of $'
|
commit | commitdiff | tree |
| 2006-09-19 |
cjfields | Added comments relevant to bug 1986
|
commit | commitdiff | tree |
| 2006-09-18 |
cjfields | Added comments pertaining to bug 1952;
|
commit | commitdiff | tree |
| 2006-09-16 |
cjfields | Add extra comment via Cathy
|
commit | commitdiff | tree |
| 2006-09-16 |
cjfields | Change to POD, req. by Cathy Riemer re: BLASTZ AXT
|
commit | commitdiff | tree |
| 2006-09-15 |
cjfields | Bug 2091 (second bug)
|
commit | commitdiff | tree |
| 2006-09-15 |
cjfields | Change input file for Structure tutorial
|
commit | commitdiff | tree |
| 2006-09-15 |
cjfields | bug 1810
|
commit | commitdiff | tree |
| 2006-09-15 |
cjfields | Bug 1810
|
commit | commitdiff | tree |
| 2006-09-14 |
cjfields | small test fix
|
commit | commitdiff | tree |
| 2006-09-14 |
cjfields | Refactored code now passes all tests; let others try...
|
commit | commitdiff | tree |
| 2006-09-14 |
cjfields | Reverting this back to 1.22, and turning off debugging
|
commit | commitdiff | tree |
| 2006-09-14 |
cjfields | Refactored from_string() for full recursion, get rid...
|
commit | commitdiff | tree |
| 2006-09-13 |
cjfields | isa_ok, not 'is ref()'
|
commit | commitdiff | tree |
| 2006-09-13 |
cjfields | Try to make tests pass saner
|
commit | commitdiff | tree |
| 2006-09-11 |
cjfields | use cmp_ok, not is.
|
commit | commitdiff | tree |
| 2006-09-11 |
cjfields | Moving Test::Simple to t/lib
|
commit | commitdiff | tree |
| 2006-09-11 |
cjfields | Moving Test::Simple to t/lib
|
commit | commitdiff | tree |
| 2006-09-11 |
cjfields | Moving Test::Simple to t/lib
|
commit | commitdiff | tree |
| 2006-09-11 |
cjfields | fixed spacing for future bugfix
|
commit | commitdiff | tree |
| 2006-09-08 |
cjfields | Bug 2089
|
commit | commitdiff | tree |
| 2006-09-07 |
cjfields | Add Test folder to t/ as a fallback (for Test::Simple...
|
commit | commitdiff | tree |
| 2006-09-07 |
cjfields | Change to Test::More
|
commit | commitdiff | tree |
| 2006-09-07 |
cjfields | Bug 992
|
commit | commitdiff | tree |
| 2006-09-07 |
cjfields | last tests; now for finishing POD
|
commit | commitdiff | tree |
| 2006-09-06 |
cjfields | EUtilties fixes, additional tests
|
commit | commitdiff | tree |
| 2006-09-06 |
cjfields | STANDARD/PRELIMINARY based on SwissProt/TrEMBL
|
commit | commitdiff | tree |
