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small profiling improvement w/index files
2015-03-02
Chr
i
s Fiel
d
s
small
profiling
improve
m
ent
w
/
i
ndex files
commit
|
commitdiff
|
tree
2015-03-02
C
hri
s
F
i
elds
bit more docs on tod
o
i
t
ems
commit
|
commitdiff
|
tree
2015-03-01
Ch
r
is
F
ields
all key tests pass (only a few
h
aven't bee
n
checked
.
.
.
commit
|
commitdiff
|
tree
2015-03-01
Chris
Fields
all but
t
wo tests pas
s
ing
commit
|
commitdiff
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tree
2015-03-01
C
h
ris Fi
e
lds
trust your DB implement
a
tion,
p
articularly
i
f ancestor
.
.
.
commit
|
commitdiff
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tree
2015-03-01
Chris Fields
re
m
ove
p
as
t
o
commit
|
commitdiff
|
tree
2015-03-01
Chris Fields
v
e
nt
commit
|
commitdiff
|
tree
2015-03-01
Chris
Fields
SQLite is has case-insen
s
itive L
I
KE, n
o
need
f
o
r lc
.
.
.
commit
|
commitdiff
|
tree
2015-03-01
Chris Fields
start testing
Bio::T
a
xon
commit
|
commitdiff
|
tree
2015-03-01
Chris Field
s
implement get_ta
x
ids()
commit
|
commitdiff
|
tree
2015-02-28
Chris Fields
get basic t
e
sts, num_taxa
test passi
n
g
commit
|
commitdiff
|
tree
2015-02-28
Ch
r
is Fiel
d
s
tests (ca
r
ried over from Rem
o
teDB/Ta
x
onom
y
.
t
s
o
has
.
.
.
commit
|
commitdiff
|
tree
2015-02-28
Ch
r
is Fie
l
ds
init implem
e
ntation of num_taxa
commit
|
commitdiff
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tree
2015-02-28
C
h
ris Fi
e
lds
com
m
it renamed (b
u
t not
f
ully implemented) Bio::DB
.
.
.
commit
|
commitdiff
|
tree
2015-02-25
Chris
Fields
small test fix for ta
x
onomy wo
e
s (stop-g
a
p, need a
.
.
.
commit
|
commitdiff
|
tree
2014-10-29
Chris Fields
add la
t
est cha
n
ges to, um, Changes
commit
|
commitdiff
|
tree
2014-10-28
Chris Fie
l
ds
one
mo
r
e for
c
hange
s
commit
|
commitdiff
|
tree
2014-10-28
Chris Fie
l
ds
database
n
ame chang
e
d
commit
|
commitdiff
|
tree
2014-10-28
Chris Fie
l
ds
have t
o
ignore poss
i
b
l
y
b
a
d
ce
r
t to get
this working
.
.
.
commit
|
commitdiff
|
tree
2014-10-28
Chris Fields
have
t
o ig
n
ore possibl
y
bad cert t
o
get
t
his w
o
rking
commit
|
commitdiff
|
tree
2014-10-28
C
h
ri
s
Fi
e
lds
have to ig
n
ore possib
l
y
bad cert to g
e
t th
i
s working
commit
|
commitdiff
|
tree
2014-10-28
C
hris Field
s
yep, ano
t
her flappy
t
est
commit
|
commitdiff
|
tree
2014-10-28
Chr
i
s
Fi
e
lds
another fl
a
p
p
y test
commit
|
commitdiff
|
tree
2014-10-28
Chris Fie
l
ds
squash waffling t
e
st
commit
|
commitdiff
|
tree
2014-10-28
C
hris Fields
mino
r
cl
e
anup
commit
|
commitdiff
|
tree
2014-10-28
Chris Fi
e
lds
ad m
o
re updates
commit
|
commitdiff
|
tree
2014-10-27
Chris Fields
remo
v
e debuggin
g
commit
|
commitdiff
|
tree
2014-10-27
Chris
F
ields
do
c
ument mi
n
o
r
cha
n
ges
commit
|
commitdiff
|
tree
2014-10-27
Chr
i
s
Fi
e
lds
b
u
mp
v
e
r
sion; this seems to be caught b
y
latest
M
:
.
.
.
commit
|
commitdiff
|
tree
2014-10-26
Chris Fields
Merge branch '
m
aste
r
' o
f
gith
u
b
.
com:
b
io
p
erl/bi
o
perl
.
.
.
commit
|
commitdiff
|
tree
2014-10-26
Chris Fiel
d
s
no_index means 'do not
in
d
ex any modules
n
or add
them
.
.
.
commit
|
commitdiff
|
tree
2014-10-20
Chris Fields
s
k
ip thes
e
te
s
t
s
if LW
P
isn't installed
commit
|
commitdiff
|
tree
2014-09-14
Chris Fields
add 5
.
20 (
m
ay remove 5
.
10 at so
m
e p
o
i
n
t)
commit
|
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|
tree
2014-09-14
Chris Fields
a
d
d the
tw
o
cyclic ref testers (not r
e
q
u
ir
e
d for general
.
.
.
commit
|
commitdiff
|
tree
2014-09-13
Ch
r
is Fields
fi
x
test c
o
unt,
w
hich fail
s
if optional mem lea
k
m
o
d
ules
.
.
.
commit
|
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|
tree
2014-09-13
Chri
s
F
i
e
l
d
s
Add tests for memo
r
y
lea
k
s
a
n
d
w
e
ak
e
n for I
s
sue #
8
1
commit
|
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|
tree
2014-08-09
Chris Fields
Ad
d
tr
a
vis-c
i
badge
commit
|
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|
tree
2014-07-11
C
hr
i
s Fields
spiced_seq() may
n
eed LWP
commit
|
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|
tree
2014-07-10
Chris Fiel
d
s
fix a
w
arning
commit
|
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|
tree
2013-08-09
Ch
r
i
s
Fields
Me
r
ge pull
request #60 from MattOat
e
s
/master
commit
|
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|
tree
2012-08-24
Chris Fields
M
e
rge pull reques
t
#39
f
rom daisieh/bu
g
3
3
3
1
commit
|
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|
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2012-08-24
Chris Fields
Merge pull
reques
t
#
40
fro
m
cwittmer/ma
s
ter
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|
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|
tree