| 2008-12-12 |
cjfields | updates to EUtilities (getting ready for docs, tests...
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commit | commitdiff | tree |
| 2008-12-12 |
cjfields | Move EUtilParameters to Tools (seems more appropriate)
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | fix for bug when getting cached response with filename...
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | small pointer to wiki page (will update along with...
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | small update
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | updates
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | return, not 'return undef'
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | return, not 'return undef'
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | [bug 2699]
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | [bug 2699]
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commit | commitdiff | tree |
| 2008-12-11 |
cjfields | [bug 2707]
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commit | commitdiff | tree |
| 2008-12-10 |
cjfields | Removing from HEAD (deprecated for 1.6)
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commit | commitdiff | tree |
| 2008-12-10 |
cjfields | mini pod fix
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commit | commitdiff | tree |
| 2008-12-10 |
cjfields | update deprecation list
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commit | commitdiff | tree |
| 2008-12-10 |
cjfields | remove Bio::Graphics (separate package now)
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commit | commitdiff | tree |
| 2008-12-10 |
cjfields | [bug 2637]
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commit | commitdiff | tree |
| 2008-12-10 |
cjfields | Remove dependencies for Bio::Graphics and deprecated...
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commit | commitdiff | tree |
| 2008-12-09 |
cjfields | Squash warning
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commit | commitdiff | tree |
| 2008-12-09 |
cjfields | diag() only on verbose
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commit | commitdiff | tree |
| 2008-12-09 |
cjfields | Fix last loop tests, move some to can_ok
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commit | commitdiff | tree |
| 2008-12-09 |
cjfields | Modify to test new temp classes and ensure that added...
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commit | commitdiff | tree |
| 2008-12-09 |
cjfields | update Mauricio's email
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commit | commitdiff | tree |
| 2008-12-08 |
cjfields | Update Roy's email
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commit | commitdiff | tree |
| 2008-12-08 |
cjfields | Roy's email (and bioperl.org not bioperl.edu)
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commit | commitdiff | tree |
| 2008-12-08 |
cjfields | Updated emails
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commit | commitdiff | tree |
| 2008-12-07 |
cjfields | [bug 2699]
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commit | commitdiff | tree |
| 2008-12-05 |
cjfields | Need to retrieve the tree for output
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commit | commitdiff | tree |
| 2008-12-05 |
cjfields | [bug 2450]
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commit | commitdiff | tree |
| 2008-12-04 |
cjfields | Make Target a true DBLink
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commit | commitdiff | tree |
| 2008-12-04 |
cjfields | Directory is no longer needed (Heikki split this up...
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | add force_nse tests
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | leave ID undefined if it isn't present, but allow the...
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Remove files accidently added from last commit
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Reorganize Tools tests (needs some more splitting)
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Remove (tests are redundant, in Consed.t)
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Merge tests and remove redundant file
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Update test count
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Merge tests
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Remove redundant file
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Remove old files
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Start Tools move
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | small updates:
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | forgot to increment test count
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commit | commitdiff | tree |
| 2008-12-03 |
cjfields | Add a couple of tests for seq_id (small but significant...
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | [bug 2450]
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | [bug 2450]
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | [bug 2450]
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | [bug 2450]
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | some pod updates
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | [bug 2450]
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | fix erroneously renamed stockholm tests
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commit | commitdiff | tree |
| 2008-12-02 |
cjfields | small pod fix
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commit | commitdiff | tree |
| 2008-11-30 |
cjfields | silence GuessSeqFormat.t warnings (not sure if old...
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | rearrange to avoid unnecessary warnings
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | Add warning for missing data (real bug)
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | hash ref, not a hash
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | test file name and test # correction
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | correct test file name
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | '::', not ':'
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | rename (recursive tests think this is a test file)
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | recurse into test subdirectories (means any non-test...
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | remove redundant copy
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | move into directory structure
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commit | commitdiff | tree |
| 2008-11-28 |
cjfields | move into directory structure (DaveM++)
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commit | commitdiff | tree |
| 2008-11-26 |
cjfields | [bug 2567]
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commit | commitdiff | tree |
| 2008-11-26 |
cjfields | Redundant; file was renamed SearchIO_blast_pull.t.
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commit | commitdiff | tree |
| 2008-11-26 |
cjfields | [bug 2686]
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commit | commitdiff | tree |
| 2008-11-26 |
cjfields | fix subversion tags
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commit | commitdiff | tree |
| 2008-11-25 |
cjfields | po, not poa
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commit | commitdiff | tree |
| 2008-11-25 |
cjfields | fix undefined value warnings
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commit | commitdiff | tree |
| 2008-11-25 |
cjfields | [bug 2686]
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commit | commitdiff | tree |
| 2008-11-25 |
cjfields | [bug 2641, 2642]
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commit | commitdiff | tree |
| 2008-11-25 |
cjfields | split up AlignIO tests
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commit | commitdiff | tree |
| 2008-11-25 |
cjfields | [bug 2682]
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commit | commitdiff | tree |
| 2008-11-25 |
cjfields | [bug 2630]
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commit | commitdiff | tree |
| 2008-11-24 |
cjfields | [bug 2633]
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commit | commitdiff | tree |
| 2008-11-24 |
cjfields | [bug 2663]
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commit | commitdiff | tree |
| 2008-11-24 |
cjfields | [bug 2663]
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commit | commitdiff | tree |
| 2008-11-24 |
cjfields | [bug 2630]
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commit | commitdiff | tree |
| 2008-11-24 |
cjfields | [bug 2262]
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commit | commitdiff | tree |
| 2008-11-24 |
cjfields | [bug 2630]
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commit | commitdiff | tree |
| 2008-11-18 |
cjfields | * Double-checked data, tested results were wrong
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commit | commitdiff | tree |
| 2008-11-18 |
cjfields | * seq_inds is not defined for Model-based HSPs
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commit | commitdiff | tree |
| 2008-11-18 |
cjfields | * fix POD
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commit | commitdiff | tree |
| 2008-11-17 |
cjfields | * 'highly' (and I get r15000!)
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commit | commitdiff | tree |
| 2008-11-17 |
cjfields | Remove redundant test files
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commit | commitdiff | tree |
| 2008-11-17 |
cjfields | [tests]
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commit | commitdiff | tree |
| 2008-11-17 |
cjfields | move results2hash test utility sub to SearchUtils
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commit | commitdiff | tree |
| 2008-11-16 |
cjfields | [bug 2663]
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commit | commitdiff | tree |
| 2008-11-16 |
cjfields | perltidy
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commit | commitdiff | tree |
| 2008-11-16 |
cjfields | [bug 2635]
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commit | commitdiff | tree |
| 2008-11-14 |
cjfields | [bug 2656]
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commit | commitdiff | tree |
| 2008-11-11 |
cjfields | remove debugging lines
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commit | commitdiff | tree |
| 2008-11-11 |
cjfields | remove fixed verbose flag
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commit | commitdiff | tree |
| 2008-11-11 |
cjfields | [bug 2650]
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commit | commitdiff | tree |
| 2008-11-11 |
cjfields | Clarify result_count (discussions on mail list per...
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commit | commitdiff | tree |
| 2008-11-11 |
cjfields | [bug 2632]
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commit | commitdiff | tree |
| 2008-11-10 |
cjfields | [bug 2645]
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commit | commitdiff | tree |
| 2008-11-04 |
cjfields | wrap text
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commit | commitdiff | tree |
| 2008-11-04 |
cjfields | * parse 'Features in this part of subject sequence...
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commit | commitdiff | tree |
