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Fix last loop tests, move some to can_ok
2008-12-09
cj
f
i
eld
s
Fix last loop test
s
, move
some to can_ok
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Modify
to
t
est new
tem
p
classes
a
nd ensure
t
h
a
t
added
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjfields
update
Mauricio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updat
e
Roy'
s
email
commit
|
commitdiff
|
tree
2008-12-08
cjfi
e
ld
s
Ro
y
's email (
a
nd
b
ioperl
.
org not biop
e
rl
.
e
du)
commit
|
commitdiff
|
tree
2008-12-08
cjf
i
e
lds
Updated
e
mails
commit
|
commitdiff
|
tree
2008-12-07
cjfi
e
lds
[bug 2
6
99]
commit
|
commitdiff
|
tree
2008-12-05
cjfi
e
lds
Need to retriev
e
the tree for output
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[
bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Make T
a
rge
t
a true D
B
Link
commit
|
commitdiff
|
tree
2008-12-04
cjfields
Directory i
s
no
l
ong
e
r needed (Heikki split t
h
is up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
a
d
d force_
n
s
e
tests
commit
|
commitdiff
|
tree
2008-12-03
cjfields
le
a
ve
ID undefined if it i
s
n't present, but
allo
w
the
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfiel
d
s
R
e
move files
a
ccide
n
tly
ad
d
ed from last
c
ommit
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
R
e
o
r
ganize Tools tests (needs some
m
ore spli
t
ting)
commit
|
commitdiff
|
tree
2008-12-03
c
j
fields
Remov
e
(t
e
sts a
r
e redundant, in Consed
.
t)
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merg
e
t
e
sts and r
e
move redundant file
commit
|
commitdiff
|
tree
2008-12-03
cj
f
ields
U
p
date test count
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Merge tes
t
s
commit
|
commitdiff
|
tree
2008-12-03
c
jfields
Remo
v
e r
e
dund
a
nt file
commit
|
commitdiff
|
tree
2008-12-03
c
jfie
l
ds
Remo
v
e
old f
i
les
commit
|
commitdiff
|
tree
2008-12-03
cjfields
S
t
art T
o
ols move
commit
|
commitdiff
|
tree
2008-12-03
c
j
fiel
d
s
small u
p
dates:
commit
|
commitdiff
|
tree
2008-12-03
cjfie
l
ds
forgo
t
to i
n
crement test
c
ount
commit
|
commitdiff
|
tree
2008-12-03
c
jf
i
eld
s
Add a c
o
uple of tests for seq_id (sm
a
ll but significant
.
.
.
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
c
j
f
ields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[b
u
g 2450]
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 245
0
]
commit
|
commitdiff
|
tree
2008-12-02
cjfie
l
d
s
so
m
e pod
update
s
commit
|
commitdiff
|
tree
2008-12-02
cjfields
[bug 2
4
50]
commit
|
commitdiff
|
tree
2008-12-02
c
jf
i
eld
s
fix
e
rroneously rena
m
ed stockholm tests
commit
|
commitdiff
|
tree
2008-12-02
c
j
fields
small pod fix
commit
|
commitdiff
|
tree
2008-11-30
cjfields
silence GuessSeq
F
ormat
.
t warn
i
ngs (
n
ot
s
ur
e
if old
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rearran
g
e
t
o
avoid un
n
ecessa
r
y
warnings
commit
|
commitdiff
|
tree
2008-11-28
cjfields
Add warning
f
or
missing data (real
b
ug)
commit
|
commitdiff
|
tree
2008-11-28
cjfields
hash ref,
n
ot a has
h
commit
|
commitdiff
|
tree
2008-11-28
c
j
field
s
te
s
t f
i
le
n
a
me an
d
test #
c
orrectio
n
commit
|
commitdiff
|
tree
2008-11-28
cjfields
co
r
rect test file name
commit
|
commitdiff
|
tree
2008-11-28
cj
f
ie
l
ds
':
:
', not
'
:
'
commit
|
commitdiff
|
tree
2008-11-28
cjfields
rename
(
re
c
ursive
t
ests thi
n
k this is a test file)
commit
|
commitdiff
|
tree
2008-11-28
c
jfields
r
e
curse in
t
o test subdir
e
ctories (me
a
ns any non-te
s
t
.
.
.
commit
|
commitdiff
|
tree
2008-11-28
cjfiel
d
s
remove
r
edundant copy
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
eld
s
m
o
ve
into di
r
ectory
structu
r
e
commit
|
commitdiff
|
tree
2008-11-28
cjf
i
eld
s
m
o
ve into
d
irectory structure
(
DaveM++)
commit
|
commitdiff
|
tree
2008-11-26
cjfields
[b
u
g 2567]
commit
|
commitdiff
|
tree
2008-11-26
c
j
f
ields
R
edundant; file
was renamed Sear
c
hIO_
b
l
a
st_pull
.
t
.
commit
|
commitdiff
|
tree
2008-11-26
cjf
i
elds
[bug 2686]
commit
|
commitdiff
|
tree
2008-11-26
cjfields
fix s
u
bversion t
a
gs
commit
|
commitdiff
|
tree
2008-11-25
c
jfields
po,
n
o
t
poa
commit
|
commitdiff
|
tree
2008-11-25
cjfiel
d
s
f
i
x un
d
efined value w
a
rnings
commit
|
commitdiff
|
tree
2008-11-25
cjf
i
elds
[bug 2686]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[bug
2
641, 264
2
]
commit
|
commitdiff
|
tree
2008-11-25
cjf
i
eld
s
s
p
l
it
up AlignIO t
e
s
ts
commit
|
commitdiff
|
tree
2008-11-25
cjfiel
d
s
[bug 2682]
commit
|
commitdiff
|
tree
2008-11-25
cjfields
[
b
ug 2630]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug 2
6
33
]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[
b
u
g
266
3
]
commit
|
commitdiff
|
tree
2008-11-24
c
j
fi
e
lds
[
b
ug 2663]
commit
|
commitdiff
|
tree
2008-11-24
c
jfields
[b
u
g
26
3
0]
commit
|
commitdiff
|
tree
2008-11-24
cjfield
s
[bug 2262]
commit
|
commitdiff
|
tree
2008-11-24
cjfields
[bug
2
630]
commit
|
commitdiff
|
tree
2008-11-18
cj
f
ields
* Dou
b
le-chec
k
e
d
da
t
a,
t
ested
r
esult
s
were
wrong
commit
|
commitdiff
|
tree
2008-11-18
cjf
i
elds
* seq_i
n
ds is
not defined for Model-based HSPs
commit
|
commitdiff
|
tree
2008-11-18
c
jf
i
e
lds
* fix POD
commit
|
commitdiff
|
tree
2008-11-17
cj
f
ields
*
'h
i
g
hly' (
a
n
d I
get r15000!
)
commit
|
commitdiff
|
tree
2008-11-17
cjfields
R
e
m
o
ve redundant test
files
commit
|
commitdiff
|
tree
2008-11-17
cj
f
i
e
l
ds
[
t
ests]
commit
|
commitdiff
|
tree
2008-11-17
cjfields
move results2ha
s
h test utility sub to Searc
h
Utils
commit
|
commitdiff
|
tree
2008-11-16
cjfie
l
ds
[b
u
g
26
6
3]
commit
|
commitdiff
|
tree
2008-11-16
cjfi
e
lds
perltidy
commit
|
commitdiff
|
tree
2008-11-16
cj
f
ields
[bug 2635]
commit
|
commitdiff
|
tree
2008-11-14
c
j
fi
e
lds
[bug
2656]
commit
|
commitdiff
|
tree
2008-11-11
cjf
i
elds
remov
e
debugging lines
commit
|
commitdiff
|
tree
2008-11-11
cj
f
i
e
lds
remove fix
e
d verbose
flag
commit
|
commitdiff
|
tree
2008-11-11
cjfield
s
[b
u
g
2650]
commit
|
commitdiff
|
tree
2008-11-11
cjfields
Clar
i
fy
result_count
(discussion
s
on mail l
i
st per
.
.
.
commit
|
commitdiff
|
tree
2008-11-11
cj
f
i
elds
[bug
2
6
3
2
]
commit
|
commitdiff
|
tree
2008-11-10
cjf
i
e
lds
[bug
2
645
]
commit
|
commitdiff
|
tree
2008-11-04
cjf
i
elds
wrap text
commit
|
commitdiff
|
tree
2008-11-04
cjfields
* parse 'Featur
e
s in this
part
o
f subject
s
e
q
u
ence
.
.
.
commit
|
commitdiff
|
tree
2008-11-04
cjfields
*
p
arse 'Featur
e
s in this part of su
b
ject sequence
.
.
.
commit
|
commitdiff
|
tree
2008-10-30
cjfields
[bug 263
2
]
commit
|
commitdiff
|
tree
2008-10-29
c
j
fields
fi
x
seq_i
n
ds(); wasn't calling
identi
c
a
l
residues for
.
.
.
commit
|
commitdiff
|
tree
2008-10-29
cjf
i
e
l
d
s
[bug 2633]
commit
|
commitdiff
|
tree
2008-10-28
cjfield
s
[bu
g
2630]
commit
|
commitdiff
|
tree
2008-10-26
cjfie
l
d
s
F
ix u
n
link() warning
commit
|
commitdiff
|
tree
2008-10-26
cjf
i
e
l
d
s
end = st
a
r
t if on
l
y start is passed
commit
|
commitdiff
|
tree
2008-10-26
cjfields
use valid_Locat
i
on to check
Location state
commit
|
commitdiff
|
tree
2008-10-26
c
j
fiel
d
s
add
d
o
cs for LocationI method valid_
L
ocation
commit
|
commitdiff
|
tree
2008-10-26
c
jfie
l
ds
[bug 2621
]
commit
|
commitdiff
|
tree
2008-10-26
cjf
i
elds
[bug 2621]
commit
|
commitdiff
|
tree
2008-10-26
c
j
f
ields
[bug 2624]
commit
|
commitdiff
|
tree
2008-10-26
cj
f
ields
[bug 2621]
commit
|
commitdiff
|
tree
2008-10-25
cjfie
l
ds
bullet-pro
o
f
prototype t
e
s
t
commit
|
commitdiff
|
tree
2008-10-22
cjfie
l
d
s
f
i
x
f
ile properties
commit
|
commitdiff
|
tree
2008-10-22
cjfields
new module fo
r
parsi
n
g
ve
c
screen -f
3 output,
courtesy
.
.
.
commit
|
commitdiff
|
tree
2008-10-15
c
j
f
i
e
lds
add
-
s
ource for
A
RP
commit
|
commitdiff
|
tree
2008-10-15
cjfields
[bug 2563
]
commit
|
commitdiff
|
tree
2008-10-10
cjfields
typo
commit
|
commitdiff
|
tree
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