| 2007-07-23 |
cjfields | Catch failing tie'd DB_File handle
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commit | commitdiff | tree |
| 2007-07-19 |
cjfields | bug 2334
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commit | commitdiff | tree |
| 2007-07-18 |
cjfields | Bug 2212
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commit | commitdiff | tree |
| 2007-07-18 |
cjfields | bug 2286
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | add XML::DOM::XPath
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | Stop complaints with '.' (attributeless features);...
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | Bug 2302
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | bug 2178
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | doc fixes for ace parsing, clarify warning more
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | fix use base()
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | add unimplemented method write_assembly; removed SeqIO...
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commit | commitdiff | tree |
| 2007-07-17 |
cjfields | bug 2320
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commit | commitdiff | tree |
| 2007-07-16 |
cjfields | is, not ok
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commit | commitdiff | tree |
| 2007-07-16 |
cjfields | bug 2282
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commit | commitdiff | tree |
| 2007-07-16 |
cjfields | use CORE::close() to close file
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commit | commitdiff | tree |
| 2007-07-16 |
cjfields | test out getting rid of some of the multiple regex...
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commit | commitdiff | tree |
| 2007-07-16 |
cjfields | bug 1986 and GCG BLAST fixes (got the TODO working)
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commit | commitdiff | tree |
| 2007-07-16 |
cjfields | bug 1986 (part deux)
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commit | commitdiff | tree |
| 2007-07-15 |
cjfields | bug 1986 (second bit)
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commit | commitdiff | tree |
| 2007-07-15 |
cjfields | bug 1986 tests
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commit | commitdiff | tree |
| 2007-07-15 |
cjfields | BPLite (and ilk) deprecated
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commit | commitdiff | tree |
| 2007-07-15 |
cjfields | unnecessary use Carp
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commit | commitdiff | tree |
| 2007-07-15 |
cjfields | small fix to deal with attribute-less GFF files (prob...
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commit | commitdiff | tree |
| 2007-07-15 |
cjfields | partial fix for bug 1986
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commit | commitdiff | tree |
| 2007-07-09 |
cjfields | Use double quotes to interpolate
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commit | commitdiff | tree |
| 2007-07-09 |
cjfields | $value is undef in some cases (apparently from GBrowseGFF...
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commit | commitdiff | tree |
| 2007-07-09 |
cjfields | eutils fixes
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commit | commitdiff | tree |
| 2007-07-06 |
cjfields | Must allow other SearchIO readmethods (anything that...
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commit | commitdiff | tree |
| 2007-07-03 |
cjfields | lightweight HistoryI holder (used in a queue in place...
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commit | commitdiff | tree |
| 2007-07-03 |
cjfields | introduce lightweight HistoryI (aka cookies) to decouple...
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | Changed class name to something more relevant
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | A few changes; changed poorly named GenericWebDBI to...
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2321
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2325
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2262
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2262 (add caveat, TODO about Meta::Array interface...
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2305
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commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2288
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commit | commitdiff | tree |
| 2007-07-01 |
cjfields | bug 2317
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commit | commitdiff | tree |
| 2007-07-01 |
cjfields | bug 2299
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commit | commitdiff | tree |
| 2007-07-01 |
cjfields | bug 2295
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commit | commitdiff | tree |
| 2007-06-28 |
cjfields | Add optional history queueing, other things
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commit | commitdiff | tree |
| 2007-06-28 |
cjfields | added a few new methods
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commit | commitdiff | tree |
| 2007-06-26 |
cjfields | obsolete (functionality moved to Bio::Tools::EUtilities)
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commit | commitdiff | tree |
| 2007-06-26 |
cjfields | commits for overhaul (finally got POST working)
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commit | commitdiff | tree |
| 2007-06-25 |
cjfields | Implement eutils callbacks, iterator generation, lazy...
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commit | commitdiff | tree |
| 2007-06-25 |
cjfields | Cleaning up API, need to clean up POD and make callbacks...
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commit | commitdiff | tree |
| 2007-06-23 |
cjfields | eutils parsers, part of EUtilities overhaul (still...
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commit | commitdiff | tree |
| 2007-06-19 |
cjfields | taking tests offline for the time being until I finish...
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commit | commitdiff | tree |
| 2007-06-14 |
cjfields | Removed two tests; the warning that these tests caught...
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commit | commitdiff | tree |
| 2007-06-07 |
cjfields | Some more fixes for bug 2305
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commit | commitdiff | tree |
| 2007-06-05 |
cjfields | Partial fix for bug 2305
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commit | commitdiff | tree |
| 2007-06-05 |
cjfields | prettify verbose warnings a little more
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commit | commitdiff | tree |
| 2007-05-21 |
cjfields | Remove incomplete module (OK'd per Allen Day)
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commit | commitdiff | tree |
| 2007-05-12 |
cjfields | initial commit; part of EUtilities overhaul
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commit | commitdiff | tree |
| 2007-05-08 |
cjfields | small comment for tracking bug 1986
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commit | commitdiff | tree |
| 2007-05-08 |
cjfields | New generic interface encapsulating parameters and...
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commit | commitdiff | tree |
| 2007-05-01 |
cjfields | small bug fixes
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commit | commitdiff | tree |
| 2007-05-01 |
cjfields | Update on v.0.81 output; will try to add parsing support...
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commit | commitdiff | tree |
| 2007-04-27 |
cjfields | possible fix for bug 2279
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commit | commitdiff | tree |
| 2007-04-20 |
cjfields | revamping eutils tests; ramping up for refactoring
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commit | commitdiff | tree |
| 2007-04-19 |
cjfields | Fix for recent DB.t woes
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commit | commitdiff | tree |
| 2007-04-19 |
cjfields | separate ID string generation into a private method
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commit | commitdiff | tree |
| 2007-04-17 |
cjfields | change odd messages to diag(); use isa_ok(), not ok...
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commit | commitdiff | tree |
| 2007-04-16 |
cjfields | cleanup and convert to Test::More
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | bug 2271
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | bug 2272
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | fix Location.t; MitoProt.t now runs under BIOPERLDEBUG=1
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | forgot to uncomment
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More convesion
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | Small DB.t fixes; GenBank query is failing but may...
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | convert to Test::More
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | convert to Test::More; IMAGE_TESTS seem to fail but...
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | convert to Test::More
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commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup tests; set network tests so they won't run...
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commit | commitdiff | tree |
| 2007-04-12 |
cjfields | Convert to Test::More
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commit | commitdiff | tree |
| 2007-04-12 |
cjfields | cleanup cruft
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commit | commitdiff | tree |
| 2007-04-12 |
cjfields | moved to Test::More
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commit | commitdiff | tree |
| 2007-04-12 |
cjfields | bug 2270
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commit | commitdiff | tree |
| 2007-04-12 |
cjfields | move to Test::More
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commit | commitdiff | tree |
| 2007-04-12 |
cjfields | Finish M-N (convert to Test::More)
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commit | commitdiff | tree |
| 2007-04-11 |
cjfields | Don't forget lucy!
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commit | commitdiff | tree |
| 2007-04-11 |
cjfields | Finished L's (move to Test::More)
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commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | Convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | select_noncont() sorts numerically by default (fixed...
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commit | commitdiff | tree |
| 2007-04-11 |
cjfields | bug 2264, 2265
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commit | commitdiff | tree |
| 2007-04-05 |
cjfields | bug 2263
|
commit | commitdiff | tree |
| 2007-04-02 |
cjfields | write_seq() is not implemented
|
commit | commitdiff | tree |
