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Added script for breaking sequence files into equal sized parts.
2013-07-12
Lincoln Stein
add ver
s
ion number
t
o LoadHelper
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2013-07-12
Lincol
n
Stein
d
r
a
matically i
m
prove performance whe
n
lo
a
d
ing multipl
e
.
.
.
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|
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tree
2013-07-10
Lincoln Stein
Perform
a
n
c
e improveme
n
ts fo
r
G
FF3
l
o
ader
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|
commitdiff
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tree
2012-08-30
L
in
c
oln St
e
in
do
n
o
t
filter out matche
s
t
o primary_
i
d from
list of
.
.
.
commit
|
commitdiff
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tree
2012-08-30
Lincoln
S
tein
Merge branch '
m
a
ster' of git://
g
ithub
.
co
m
/bioperl/bio
p
erl
.
.
.
commit
|
commitdiff
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tree
2012-03-09
Lincoln Stein
mak
e
exact nam
e
m
a
tches case-insen
s
it
i
ve
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|
commitdiff
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tree
2012-03-09
Lincoln
S
tein
make has_tag() metho
d
less cryp
t
i
c
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tree
2011-05-25
Linc
o
ln S
t
ein
Merge bra
n
ch 'master' of github
.
com:
b
ioperl/biop
e
r
l
.
.
.
commit
|
commitdiff
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tree
2011-05-25
Lincoln Stein
fix brok
e
n
types
(
) method i
n
Se
q
F
e
ature::Store
m
emory
.
.
.
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2011-05-25
Lincoln Stein
f
i
x
b
roken types()
m
ethod
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|
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tree
2011-04-11
L
incoln Stein
mysql ada
p
t
or now checks v
e
rsion of mysql and use
s
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Linc
o
ln S
t
ein
fixed
bu
g
i
n cove
r
ag
e
statistics
calculations t
h
at
.
.
.
commit
|
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|
tree
2011-04-01
Lin
c
o
l
n
S
te
i
n
fix
e
d re
g
ression
i
n
Bio
:
:DB::
G
FF a
n
d remove
d
deprecated
.
.
.
commit
|
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tree
2011-03-29
Lin
c
o
l
n Stein
changed varchar defi
n
iti
o
n f
r
om
2
56 to 25
5
to
"f
i
x
.
.
.
commit
|
commitdiff
|
tree
2011-03-09
Linco
l
n Stei
n
fixe
d
up berkeleydb adapto
r
to
p
ass new set of
r
e
gressi
o
n
.
.
.
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|
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tree
2011-03-09
Lin
c
oln Ste
i
n
improved
p
e
rformance of S
Q
Lite and mysql adaptors w
h
en
.
.
.
commit
|
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|
tree
2011-03-09
Linc
o
ln
Stein
W
o
rked
around ch
a
nges
i
n me
m
ory adapter withou
t
abolishin
g
.
.
.
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|
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tree
2011-01-21
Lincoln Stein
added missing m
e
thod
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|
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tree
2010-07-29
Linco
l
n St
e
in
m
e
rge
commit
|
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|
tree
2010-07-28
Lincoln St
e
in
F
i
xed sql s
y
nt
a
x
e
rror in creation of inte
r
val_stats
.
.
.
commit
|
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tree
2010-07-26
Linco
l
n Stein
added inter
v
al stats su
p
p
ort to pg - untested
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|
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2010-07-08
L
i
ncoln Stein
Merg
e
branch
'
m
a
s
ter' o
f
g
i
thub
.
com:bioper
l
/
b
ioperl
.
.
.
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|
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2010-07-08
L
in
c
o
ln
S
tein
added Dan Bolser's patches to f
i
x
i
n
c
onsist
e
nt namespacing
.
.
.
commit
|
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2010-07-06
Lincoln Stein
ported
i
nterval statistics to ora
c
le ada
p
tor, b
u
t not
.
.
.
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|
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2010-07-06
Lincol
n
Stein
a
dde
d
interval
s
tatist
i
cs gathering to Pg
a
da
p
tor
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|
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2010-07-06
Lincol
n
Stein
a
d
ded summa
r
y mode to bio::d
b
::
g
ff mysql adapt
o
r
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|
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2010-06-29
L
i
ncoln St
e
i
n
M
e
rge branc
h
'master' of git@gith
u
b
.
com:bio
p
erl/bioperl
.
.
.
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|
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2010-06-29
Lincoln S
t
ein
added ro
u
tine
s
to fetch all
s
e
qids
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|
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tree
2010-06-24
Lin
c
oln Stein
adde
d
_seq_id me
t
h
o
d
to many SeqFeature
:
:Store databases
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|
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2010-06-21
Linco
l
n Stein
Merge bra
n
c
h
'master' o
f
git@github
.
com:bi
o
per
l
/biope
r
l
.
.
.
commit
|
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|
tree
2010-06-21
Lincol
n
Stein
in-memor
y
a
d
ap
t
or now produce
s
a
warn
i
ng
i
f th
e
fasta
.
.
.
commit
|
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2010-06-10
Lincoln Ste
i
n
seqfeature
s
tore dat
a
ba
s
e loade
r
turns o
n
s
u
mmary statistics
.
.
.
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|
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2010-06-10
Lin
c
oln
St
e
i
n
Merge branch 'master' of gi
t
@
github
.
com:biop
e
rl/biope
r
l
.
.
.
commit
|
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2010-05-25
Li
n
coln Stein
made na
m
e searches faster by p
r
e
-
lowercasin
g
the name
.
.
.
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|
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2010-05-24
Lincoln Stei
n
memory adaptor produ
c
e
s summary stats;
r
ead
y
t
o mer
g
e
.
.
.
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|
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2010-05-24
Lincol
n
S
tein
don't add :bins to summa
r
y feature type; it
c
o
nfu
s
es
.
.
.
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|
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2010-05-24
Lin
c
oln
S
tein
berkeley
d
b ada
p
tor generati
n
g summary
st
a
tist
i
c
s
more
.
.
.
commit
|
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|
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2010-05-24
Linc
o
l
n S
t
e
i
n
Th
e
Ber
k
eleyd
b
a
d
a
p
tor is now
buildin
g
s
u
mm
a
ry
status
.
.
.
commit
|
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|
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2010-05-24
Lincoln Stein
Clean
e
d up
s
ummary
g
eneration
.
C
an genera
t
e summary
.
.
.
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|
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2010-05-23
Lincoln Stein
Merge branch 'lstei
n
-se
q
feature-s
t
ore-sum
m
arie
s
' of
.
.
.
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|
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|
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2010-05-23
L
in
c
oln Ste
i
n
m
y
sql a
d
aptor
n
ow buil
d
s su
m
mary (coverage) st
a
tistics
.
.
.
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|
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2010-05-21
L
i
n
coln
Stein
gene coverage stats see
m
to be working,,,basically
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