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2013-07-12	Florent Angly	Fixed redefined variable	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Small POD and and error message change	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Adding arbitrary branch length in Bio::DB::Taxonomy...	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Use a default format for as_string	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Test uses species, not intermediary node	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Avoid use of an undefined value as an ARRAY reference	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Use list context instead of scalar context to include...	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Fixed POD indentation	commit \| commitdiff \| tree
2013-07-12	Florent Angly	Tests for Bio::Taxonomy::get_tree	commit \| commitdiff \| tree
2013-07-11	Florent Angly	More thoroughly documented options and defaults	commit \| commitdiff \| tree
2013-07-11	Florent Angly	Restoring intended behaviour... I think	commit \| commitdiff \| tree
2013-07-11	Florent Angly	Fixed failing DBD test	commit \| commitdiff \| tree
2013-02-03	Florent Angly	Fixed POD encoding issue	commit \| commitdiff \| tree
2012-11-18	Florent Angly	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2012-11-17	Florent Angly	Merge branch 'master' into bug_3390	commit \| commitdiff \| tree
2012-11-17	Florent Angly	Tightened and optimized quality string validation	commit \| commitdiff \| tree
2012-11-17	Florent Angly	Updated planned number of tests	commit \| commitdiff \| tree
2012-11-17	Florent Angly	'our' is preferred over 'use vars'	commit \| commitdiff \| tree
2012-11-17	Florent Angly	Test updates (PrimaryQual mostly)	commit \| commitdiff \| tree
2012-11-17	Florent Angly	PrimarySeq validation speedup	commit \| commitdiff \| tree
2012-11-16	Florent Angly	Instead of closures, simply store attributes in $selft	commit \| commitdiff \| tree
2012-11-15	Florent Angly	Merge branch 'seqlength'	commit \| commitdiff \| tree
2012-11-09	Florent Angly	Updated number of tests	commit \| commitdiff \| tree
2012-11-06	Florent Angly	PrimaryQual validation synchronized with that of PrimarySeq	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Same revcom() and length() approach in Bio::DB::Qual...	commit \| commitdiff \| tree
2012-11-06	Florent Angly	New length() method neeed to consider strandedness	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Also revert to old revcom() + test + doc	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Reverted to previous behaviour, i.e. override PrimarySeqI...	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Bio::DB::length improvement	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Bio::PrimaryQual POD update	commit \| commitdiff \| tree
2012-11-06	Florent Angly	More Bio::DB::Qual tests	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Let PrimarySeqI handle revcom() and trunc()	commit \| commitdiff \| tree
2012-11-06	Florent Angly	Test Bio::PrimarySeq::Fasta compliance with Bio::PrimarySeqI	commit \| commitdiff \| tree
2012-11-05	Florent Angly	More tests	commit \| commitdiff \| tree
2012-11-05	Florent Angly	Added a test	commit \| commitdiff \| tree
2012-11-05	Florent Angly	Cosmetic changeS	commit \| commitdiff \| tree
2012-11-05	Florent Angly	Redundant messages	commit \| commitdiff \| tree
2012-11-05	Florent Angly	validate_seq() takes a string as argument	commit \| commitdiff \| tree
2012-11-05	Florent Angly	undef sequence strings are valid sequences	commit \| commitdiff \| tree
2012-11-05	Florent Angly	Small fix	commit \| commitdiff \| tree
2012-11-05	Florent Angly	Redundant sequence validation	commit \| commitdiff \| tree
2012-11-05	Florent Angly	Cosmetic changes, indentation, etc	commit \| commitdiff \| tree
2012-11-05	Florent Angly	Avoid warning message during testing	commit \| commitdiff \| tree
2012-11-01	Florent Angly	Hardening test	commit \| commitdiff \| tree
2012-11-01	Florent Angly	Fix for regression bug #3390	commit \| commitdiff \| tree
2012-11-01	Florent Angly	Updated tests for Bio::DB::Fasta	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Added test for bug 3390	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Added tests that use the file() method	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Changes file update	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Changes update	commit \| commitdiff \| tree
2012-10-31	Florent Angly	-direct valid only once	commit \| commitdiff \| tree
2012-10-31	Florent Angly	subseq() speedup	commit \| commitdiff \| tree
2012-10-31	Florent Angly	More length() tests and some POD update	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Removed some code redundancy	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Bio::PrimarySeqI speedup	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Cosmetic changeS	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Cosmetic changes	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Avoid new() just to revcom() a sequence	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Subseq() optimisation	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Testing subseq() more thoroughly	commit \| commitdiff \| tree
2012-10-31	Florent Angly	More tests for validate_seq()	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Testing validate_seq() and -ref_to_seq	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Constructor -ref_to_seq fix	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Small changes in seq() for clarity	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Small fix in validation error message	commit \| commitdiff \| tree
2012-10-31	Florent Angly	PrimarySeq::seq() modularization	commit \| commitdiff \| tree
2012-10-31	Florent Angly	Removed unneeded method	commit \| commitdiff \| tree
2012-10-31	Florent Angly	POD update and more consitent variable names	commit \| commitdiff \| tree
2012-10-30	Florent Angly	PrimarySeq direct mode fix/improvement	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Small POD and tests updates	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Doc fixes	commit \| commitdiff \| tree
2012-10-30	Florent Angly	More tests for PrimarySeq	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Fixes issue in EncodedSeq	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Cosmetic changes	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Consistent indentation	commit \| commitdiff \| tree
2012-10-30	Florent Angly	SeqFastaSpeedFactory fix	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Consistent indentation	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Bio::PrimarySeq::length() optimizations	commit \| commitdiff \| tree
2012-10-30	Florent Angly	More tests for Bio::PrimarySeq::length()	commit \| commitdiff \| tree
2012-10-30	Florent Angly	POD updated and beautification	commit \| commitdiff \| tree
2012-10-30	Florent Angly	More tests for Bio::PrimarySeq::length()	commit \| commitdiff \| tree
2012-10-30	Florent Angly	Added tests for Bio::PrimarySeq::length()	commit \| commitdiff \| tree
2012-10-29	Florent Angly	Fix for bug #3389	commit \| commitdiff \| tree
2012-10-29	Florent Angly	PrimarySeq::length() speedup	commit \| commitdiff \| tree
2012-10-10	Florent Angly	Better 0-length sequence support for Bio::DB::Qual...	commit \| commitdiff \| tree
2012-10-10	Florent Angly	Better support for 0-length sequences	commit \| commitdiff \| tree
2012-09-24	Florent Angly	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2012-09-24	Florent Angly	Fixed an untested regression in Bio::DB::Fasta	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Regexp to match RNA on request only	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Fixed indentation	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Reversed problematic commit 8334d175ffba095a9447038d421cac0d...	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Merge branch 'amplicons'	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Merge branch 'master' of github.com:bioperl/bioperl...	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Removed some comments	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Compound ID can now includ the strand	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Bio::DB::IndexedBase compliance with Bio::DB:SeqI and...	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Fixed typo	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Fixed silly error	commit \| commitdiff \| tree
2012-09-10	Florent Angly	Updated Bio::DB::SeqI POD according to info in Bio...	commit \| commitdiff \| tree
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