| 2015-03-25 |
Chris Fields | even better DOI
|
commit | commitdiff | tree |
| 2015-03-25 |
Chris Fields | add DOI badge from Zenodo
|
commit | commitdiff | tree |
| 2015-03-05 |
Chris Fields | skip tests when using perl < 5.12
|
commit | commitdiff | tree |
| 2015-03-05 |
Chris Fields | Merge branch master of github.com:bioperl/bioperl-live
|
commit | commitdiff | tree |
| 2015-03-05 |
Chris Fields | remove test file
|
commit | commitdiff | tree |
| 2015-03-02 |
Chris Fields | a bit more doc; getting about 1000 full lineage lookups...
|
commit | commitdiff | tree |
| 2015-03-02 |
Chris Fields | small profiling improvement w/index files
|
commit | commitdiff | tree |
| 2015-03-02 |
Chris Fields | bit more docs on todo items
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | all key tests pass (only a few haven't been checked...
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | all but two tests passing
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | trust your DB implementation, particularly if ancestor...
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | remove pasto
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | vent
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | SQLite is has case-insensitive LIKE, no need for lc...
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | start testing Bio::Taxon
|
commit | commitdiff | tree |
| 2015-03-01 |
Chris Fields | implement get_taxids()
|
commit | commitdiff | tree |
| 2015-02-28 |
Chris Fields | get basic tests, num_taxa test passing
|
commit | commitdiff | tree |
| 2015-02-28 |
Chris Fields | tests (carried over from RemoteDB/Taxonomy.t so has...
|
commit | commitdiff | tree |
| 2015-02-28 |
Chris Fields | init implementation of num_taxa
|
commit | commitdiff | tree |
| 2015-02-28 |
Chris Fields | commit renamed (but not fully implemented) Bio::DB...
|
commit | commitdiff | tree |
| 2015-02-25 |
Chris Fields | small test fix for taxonomy woes (stop-gap, need a...
|
commit | commitdiff | tree |
| 2014-11-05 |
Chris Fields | squash warning by explicitly using said module to get...
|
commit | commitdiff | tree |
| 2014-10-29 |
Chris Fields | add latest changes to, um, Changes
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | one more for changes
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | database name changed
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | have to ignore possibly bad cert to get this working...
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | have to ignore possibly bad cert to get this working
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | have to ignore possibly bad cert to get this working
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | yep, another flappy test
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | another flappy test
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | squash waffling test
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | minor cleanup
|
commit | commitdiff | tree |
| 2014-10-28 |
Chris Fields | ad more updates
|
commit | commitdiff | tree |
| 2014-10-27 |
Chris Fields | remove debugging
|
commit | commitdiff | tree |
| 2014-10-27 |
Chris Fields | document minor changes
|
commit | commitdiff | tree |
| 2014-10-27 |
Chris Fields | bump version; this seems to be caught by latest M:...
|
commit | commitdiff | tree |
| 2014-10-26 |
Chris Fields | Merge branch 'master' of github.com:bioperl/bioperl...
|
commit | commitdiff | tree |
| 2014-10-26 |
Chris Fields | no_index means 'do not index any modules nor add them...
|
commit | commitdiff | tree |
| 2014-10-25 |
Chris Fields | Merge pull request #85 from nyamned/patch-1
|
commit | commitdiff | tree |
| 2014-10-20 |
Chris Fields | skip these tests if LWP isn't installed
|
commit | commitdiff | tree |
| 2014-09-14 |
Chris Fields | add 5.20 (may remove 5.10 at some point)
|
commit | commitdiff | tree |
| 2014-09-14 |
Chris Fields | add the two cyclic ref testers (not required for general...
|
commit | commitdiff | tree |
| 2014-09-13 |
Chris Fields | fix test count, which fails if optional mem leak modules...
|
commit | commitdiff | tree |
| 2014-09-13 |
Chris Fields | Add tests for memory leaks and weaken for Issue #81
|
commit | commitdiff | tree |
| 2014-08-09 |
Chris Fields | Add travis-ci badge
|
commit | commitdiff | tree |
| 2014-07-11 |
Chris Fields | spiced_seq() may need LWP
|
commit | commitdiff | tree |
| 2014-07-10 |
Chris Fields | fix a warning
|
commit | commitdiff | tree |
| 2014-06-06 |
Chris Fields | Clean up and move to proper spot
|
commit | commitdiff | tree |
| 2014-06-06 |
Chris Fields | Add tsibley's work to Changes file
|
commit | commitdiff | tree |
| 2014-05-27 |
Chris Fields | Revert "Move Build.pm out of Root into an install-specific...
|
commit | commitdiff | tree |
| 2014-05-27 |
Chris Fields | Move Build.pm out of Root into an install-specific...
|
commit | commitdiff | tree |
| 2014-05-23 |
Chris Fields | change default BLAST URL per Scott McGinnis at NCBI
|
commit | commitdiff | tree |
| 2014-05-15 |
Chris Fields | Add a potential fix for AMPHORA2 newick support; this...
|
commit | commitdiff | tree |
| 2014-04-21 |
Chris Fields | changes all issue tracking in preparation for switch...
|
commit | commitdiff | tree |
| 2014-03-29 |
Chris Fields | spellink
|
commit | commitdiff | tree |
| 2013-12-24 |
Chris Fields | fix fussy test
|
commit | commitdiff | tree |
| 2013-12-18 |
Chris Fields | skip Bio::ASN1::EntrezGene check (circ dependency fixed...
|
commit | commitdiff | tree |
| 2013-12-18 |
Chris Fields | [skip ci] add some changes
|
commit | commitdiff | tree |
| 2013-11-26 |
Chris Fields | Revert "test failing build"
|
commit | commitdiff | tree |
| 2013-11-26 |
Chris Fields | test failing build
|
commit | commitdiff | tree |
| 2013-11-26 |
Chris Fields | test Bio::ASN1::EntrezGene
|
commit | commitdiff | tree |
| 2013-11-26 |
Chris Fields | see if we can get travis-ci notifications working
|
commit | commitdiff | tree |
| 2013-10-17 |
Chris Fields | fix issue with seq_id when set to 0, patch courtesy...
|
commit | commitdiff | tree |
| 2013-10-14 |
Chris Fields | add support for a stricter standard codon table, for...
|
commit | commitdiff | tree |
| 2013-10-14 |
Chris Fields | add some additional comments
|
commit | commitdiff | tree |
| 2013-10-06 |
Chris Fields | fix NCBIHelper bug, vars => ours
|
commit | commitdiff | tree |
| 2013-10-06 |
Chris Fields | remove and refactor genbank CONTIG code, address part...
|
commit | commitdiff | tree |
| 2013-10-05 |
Chris Fields | clean up code
|
commit | commitdiff | tree |
| 2013-10-05 |
Chris Fields | add test case for GenBank tests for bug #3448
|
commit | commitdiff | tree |
| 2013-09-16 |
Chris Fields | change eutil URL
|
commit | commitdiff | tree |
| 2013-09-14 |
Chris Fields | update Changes
|
commit | commitdiff | tree |
| 2013-09-12 |
Chris Fields | chmod of Build.PL to not be exe
|
commit | commitdiff | tree |
| 2013-09-12 |
Chris Fields | update Changes
|
commit | commitdiff | tree |
| 2013-09-12 |
Chris Fields | some ambiguity issues with this method call for some...
|
commit | commitdiff | tree |
| 2013-09-10 |
Chris Fields | skip tests if the cloning class used happens to be...
|
commit | commitdiff | tree |
| 2013-09-09 |
Chris Fields | Don't compare floats directly; make range of comparisons...
|
commit | commitdiff | tree |
| 2013-09-07 |
Chris Fields | remove multi-declaration warning
|
commit | commitdiff | tree |
| 2013-09-07 |
Chris Fields | fix skip miscounts
|
commit | commitdiff | tree |
| 2013-09-07 |
Chris Fields | remove Bio::ASN1::EntrezGene from tests, this still...
|
commit | commitdiff | tree |
| 2013-09-04 |
Chris Fields | skip tests if Bio::DB::Sam is present but samtools...
|
commit | commitdiff | tree |
| 2013-09-03 |
Chris Fields | some more README tweaks
|
commit | commitdiff | tree |
| 2013-09-03 |
Chris Fields | a few mroe markdown bits
|
commit | commitdiff | tree |
| 2013-09-03 |
Chris Fields | create README.md file
|
commit | commitdiff | tree |
| 2013-09-02 |
Chris Fields | add back perl versions
|
commit | commitdiff | tree |
| 2013-09-02 |
Chris Fields | remove branch from testing
|
commit | commitdiff | tree |
| 2013-09-02 |
Chris Fields | Merge branch 'topic/travis-scripts'
|
commit | commitdiff | tree |
| 2013-09-02 |
Chris Fields | another fix (related ID)
|
commit | commitdiff | tree |
| 2013-09-02 |
Chris Fields | fix remote DB test
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | move ASN1 back to .travis.yml
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | try getting Bio::ASN1 tests going again
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | missing Bio::Root::Build (now in Bio-Root), adding...
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | [skip ci] redirect all output to tail
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | clean up and add a few install msgs for travis-ci log...
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | add local dir to PERL5LIB
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | fix braino
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | add circular dep installs to script (and rename script)
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | add comment on builds, but Bio::DB::Sam works for testing...
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | fix ordering of installs
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | turn on verbose mode; convert samtools to use -fPIC
|
commit | commitdiff | tree |
| 2013-08-13 |
Chris Fields | skip all but latest perl (cut down on jobs), and change...
|
commit | commitdiff | tree |
