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(Thomas Sibley): Tell Storable to freeze and thaw CODE refs
2013-12-04
F
r
a
ncisco J
.
Ossandon
Bio/Search
I
O/blast
.
pm
:
Fi
x
ed bug #2
9
78
.
Add
e
d a c
o
de
.
.
.
commit
|
commitdiff
|
tree
2013-11-25
Fr
a
ncisco J
.
Os
s
an
d
on
Bio/Se
q
IO/interpro
.
pm: Recognition of '
<
protein>'
i
s
.
.
.
commit
|
commitdiff
|
tree
2013-11-23
Francisco J
.
Ossando
n
Removed
tabs from previous commit
commit
|
commitdiff
|
tree
2013-11-23
Fran
c
i
sco J
.
Ossandon
Bio/Sim
p
leA
l
ign
.
pm:
Fixed a TODO, allowed the use of
.
.
.
commit
|
commitdiff
|
tree
2013-11-22
Francis
c
o J
.
O
s
sand
o
n
Untabi
f
i
e
d
't/LocalDB/Ind
e
x/Index
.
t' and delete
d
some
.
.
.
commit
|
commitdiff
|
tree
2013-11-22
Fran
c
is
c
o J
.
Ossandon
Big Windows
compatibili
t
y fixes
.
Now a
l
l test
s
pass
.
.
.
commit
|
commitdiff
|
tree
2013-11-21
Franc
i
sc
o
J
.
Os
s
a
n
don
Bio/Index/Bl
a
st: Fixed
_
i
n
dex_fil
e
to adjus
t
fileh
a
ndle
.
.
.
commit
|
commitdiff
|
tree
2013-11-21
Francisco
J
.
Ossand
o
n
Bio/SearchIO/blasttable: Recover c
o
nse
r
ved value from
.
.
.
commit
|
commitdiff
|
tree
2013-11-21
Francisco J
.
Ossan
d
on
Bio/A
s
s
e
mbly
/
Singlet:
G
e
t
E
nd fr
o
m parent seq
u
en
c
e
.
.
.
commit
|
commitdiff
|
tree
2013-11-21
Francisco J
.
O
s
sandon
Bio/In
d
ex/
A
b
stract: Fixed uninitialized warning from
.
.
.
commit
|
commitdiff
|
tree
2013-11-20
Francisco J
.
Os
s
andon
M
e
rge pull
r
eq
u
est
#54
f
rom fjossandon
/
master
commit
|
commitdiff
|
tree
2013-11-11
Francisco J
.
Ossandon
Bio/SeqF
e
ature/Generic
.
pm: Fixed uninitia
l
ized warnings
commit
|
commitdiff
|
tree
2013-11-11
Fra
n
ci
s
co J
.
Ossandon
t/SeqFeat
u
re/
G
eneric
.
t
:
Fixed a test of cir
c
ular sequence
s
.
.
.
commit
|
commitdiff
|
tree
2013-11-11
Francisco J
.
Ossan
d
o
n
Bio/SeqFe
a
ture/Ge
n
e
r
ic
.
pm:
Updat
e
d Start,
E
n
d
and Leng
t
h
.
.
.
commit
|
commitdiff
|
tree
2013-11-08
F
ranc
i
sco
J
.
Ossan
d
on
Bio/DB/Fasta
.
pm: S
m
all Windows comp
a
t
ibility fix
in
.
.
.
commit
|
commitdiff
|
tree
2013-11-08
Francisco
J
.
Ossando
n
Bio/
S
eqFeatureI
.
pm: Changes to spliced_seq sequence
.
.
.
commit
|
commitdiff
|
tree
2013-11-08
Francisco J
.
O
s
san
d
on
Bio
/
Facto
r
y/
F
TLocatio
n
Fa
c
tory
.
p
m
: Refined
l
o
gic for
.
.
.
commit
|
commitdiff
|
tree
2013-11-08
Franc
i
sco J
.
Ossandon
Merge remote bra
n
c
h
'upstream/master' into t
e
st
commit
|
commitdiff
|
tree
2013-09-22
Francis
c
o J
.
Ossandon
B
i
o/Primary
S
eq
.
pm: Fixed some
'
u
ninitialized va
l
u
e
.
.
.
commit
|
commitdiff
|
tree
2013-09-22
Fr
a
ncisco J
.
Ossa
n
don
M
e
rge r
e
mote
b
r
anch 'upstream/mas
t
er' into test
commit
|
commitdiff
|
tree
2013-09-22
Francisco J
.
O
ssandon
Bio
/
Seq
U
tils: trunc_with_featur
e
s(
)
and revcom_with_features()
commit
|
commitdiff
|
tree
2013-09-22
F
r
ancis
c
o J
.
Ossa
n
don
Fix typing errors
commit
|
commitdiff
|
tree
2013-09-18
F
rancisco J
.
Oss
a
ndon
FTLocat
i
o
nFa
c
to
r
y
.
pm: Fix
in
fro
m
_string() for some
.
.
.
commit
|
commitdiff
|
tree
2013-09-17
Fr
a
n
cisco J
.
Ossandon
PrimarySeqI
.
pm: Avoid using Bio::Ro
o
t::clone when object
commit
|
commitdiff
|
tree
2013-09-17
Franc
i
sco J
.
Os
s
andon
M
e
rge remote branch 'upstream/master' into test
commit
|
commitdiff
|
tree
2013-04-18
F
rancisc
o
J
.
Ossando
n
Pr
i
maryS
e
q
.
t: TODO tests are n
o
w fix
e
d
.
All
t
he o
t
h
e
r
.
.
.
commit
|
commitdiff
|
tree
2013-04-18
Francisco J
.
Ossandon
P
rimarySeqI
.
p
m
: use
B
io::R
o
ot::clone t
o
ma
k
e sure
that
.
.
.
commit
|
commitdiff
|
tree
2013-04-18
F
rancisco J
.
Os
s
and
o
n
PrimarySeq
.
pm/new: Changed $is_c
i
rcular test to
u
s
e
.
.
.
commit
|
commitdiff
|
tree
2013-04-18
Francisco
J
.
Ossand
o
n
Merge r
e
mote
b
r
anc
h
'upstream/master'
commit
|
commitdiff
|
tree
2013-04-15
Francisco J
.
Ossa
n
don
M
erge remot
e
b
r
anch 'upstream/master'
commit
|
commitdiff
|
tree
2013-04-15
F
r
ancisc
o
J
.
Ossandon
E
xpa
n
ded some
c
omm
e
nt
s
commit
|
commitdiff
|
tree
2013-04-15
Fra
n
cisco J
.
Ossandon
A
d
ded extensive
t
esting for the introduced changes
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
Francisco
J
.
Os
s
andon
Pr
i
marySeq/subseq n
o
w
u
se
s
"guide_s
t
rand" for Split
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
F
r
anc
i
sco J
.
Os
s
an
d
on
Spl
i
t/to_FTstring don't need t
o
reverse sublocations
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
Francisco
J
.
Ossandon
Split/guide_s
t
r
an
d
now make
s
a consistency check
o
f
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
F
r
ancisco J
.
Ossand
o
n
Split/flip_strand now makes a strand consistency
c
he
c
k
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
Fran
c
isco
J
.
Os
s
andon
I
n
i
tialize the Strand value if missing before p
e
r
formin
g
.
.
.
commit
|
commitdiff
|
tree
2013-03-15
Francisco J
.
Ossandon
F
i
x for Bug #2936
,
now Split
.
pm/flip_str
a
nd sets gui
d
e_stran
.
.
.
commit
|
commitdiff
|
tree
2013-03-07
Francisc
o
J
.
Ossandon
Fix for Bu
g
#
32
5
1, p
l
us fixed a couple of r
e
g
u
lar expre
s
sion
.
.
.
commit
|
commitdiff
|
tree
2013-03-07
Francisco J
.
Ossan
d
on
Rever
t
"Fixed no-hit blast b
u
g and fau
l
ty regexs
,
added
.
.
.
commit
|
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|
tree
