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2007-06-28	cjfields	added a few new methods	commit \| commitdiff \| tree
2007-06-26	cjfields	obsolete (functionality moved to Bio::Tools::EUtilities)	commit \| commitdiff \| tree
2007-06-26	cjfields	commits for overhaul (finally got POST working)	commit \| commitdiff \| tree
2007-06-25	cjfields	Implement eutils callbacks, iterator generation, lazy...	commit \| commitdiff \| tree
2007-06-25	cjfields	Cleaning up API, need to clean up POD and make callbacks...	commit \| commitdiff \| tree
2007-06-23	cjfields	eutils parsers, part of EUtilities overhaul (still...	commit \| commitdiff \| tree
2007-06-19	cjfields	taking tests offline for the time being until I finish...	commit \| commitdiff \| tree
2007-06-14	cjfields	Removed two tests; the warning that these tests caught...	commit \| commitdiff \| tree
2007-06-07	cjfields	Some more fixes for bug 2305	commit \| commitdiff \| tree
2007-06-05	cjfields	Partial fix for bug 2305	commit \| commitdiff \| tree
2007-06-05	cjfields	prettify verbose warnings a little more	commit \| commitdiff \| tree
2007-05-21	cjfields	Remove incomplete module (OK'd per Allen Day)	commit \| commitdiff \| tree
2007-05-12	cjfields	initial commit; part of EUtilities overhaul	commit \| commitdiff \| tree
2007-05-08	cjfields	small comment for tracking bug 1986	commit \| commitdiff \| tree
2007-05-08	cjfields	New generic interface encapsulating parameters and...	commit \| commitdiff \| tree
2007-05-01	cjfields	small bug fixes	commit \| commitdiff \| tree
2007-05-01	cjfields	Update on v.0.81 output; will try to add parsing support...	commit \| commitdiff \| tree
2007-04-27	cjfields	possible fix for bug 2279	commit \| commitdiff \| tree
2007-04-20	cjfields	revamping eutils tests; ramping up for refactoring	commit \| commitdiff \| tree
2007-04-19	cjfields	Fix for recent DB.t woes	commit \| commitdiff \| tree
2007-04-19	cjfields	separate ID string generation into a private method	commit \| commitdiff \| tree
2007-04-17	cjfields	change odd messages to diag(); use isa_ok(), not ok...	commit \| commitdiff \| tree
2007-04-16	cjfields	cleanup and convert to Test::More	commit \| commitdiff \| tree
2007-04-13	cjfields	bug 2271	commit \| commitdiff \| tree
2007-04-13	cjfields	bug 2272	commit \| commitdiff \| tree
2007-04-13	cjfields	fix Location.t; MitoProt.t now runs under BIOPERLDEBUG=1	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More conversion	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More conversion	commit \| commitdiff \| tree
2007-04-13	cjfields	forgot to uncomment	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More conversion	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More conversion	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More conversion	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More conversion	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More convesion	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup from Test::More conversion	commit \| commitdiff \| tree
2007-04-13	cjfields	Small DB.t fixes; GenBank query is failing but may...	commit \| commitdiff \| tree
2007-04-13	cjfields	convert to Test::More	commit \| commitdiff \| tree
2007-04-13	cjfields	convert to Test::More; IMAGE_TESTS seem to fail but...	commit \| commitdiff \| tree
2007-04-13	cjfields	convert to Test::More	commit \| commitdiff \| tree
2007-04-13	cjfields	cleanup tests; set network tests so they won't run...	commit \| commitdiff \| tree
2007-04-12	cjfields	Convert to Test::More	commit \| commitdiff \| tree
2007-04-12	cjfields	cleanup cruft	commit \| commitdiff \| tree
2007-04-12	cjfields	moved to Test::More	commit \| commitdiff \| tree
2007-04-12	cjfields	bug 2270	commit \| commitdiff \| tree
2007-04-12	cjfields	move to Test::More	commit \| commitdiff \| tree
2007-04-12	cjfields	Finish M-N (convert to Test::More)	commit \| commitdiff \| tree
2007-04-11	cjfields	Don't forget lucy!	commit \| commitdiff \| tree
2007-04-11	cjfields	Finished L's (move to Test::More)	commit \| commitdiff \| tree
2007-04-11	cjfields	convert to Test::More	commit \| commitdiff \| tree
2007-04-11	cjfields	convert to Test::More	commit \| commitdiff \| tree
2007-04-11	cjfields	convert to Test::More	commit \| commitdiff \| tree
2007-04-11	cjfields	Convert to Test::More	commit \| commitdiff \| tree
2007-04-11	cjfields	convert to Test::More	commit \| commitdiff \| tree
2007-04-11	cjfields	convert to Test::More	commit \| commitdiff \| tree
2007-04-11	cjfields	select_noncont() sorts numerically by default (fixed...	commit \| commitdiff \| tree
2007-04-11	cjfields	bug 2264, 2265	commit \| commitdiff \| tree
2007-04-05	cjfields	bug 2263	commit \| commitdiff \| tree
2007-04-02	cjfields	write_seq() is not implemented	commit \| commitdiff \| tree
2007-04-02	cjfields	bug 2246	commit \| commitdiff \| tree
2007-04-02	cjfields	bug 2237	commit \| commitdiff \| tree
2007-03-30	cjfields	Small bug which botches some report parsing	commit \| commitdiff \| tree
2007-03-29	cjfields	Fix '.' being appended to scientific_name	commit \| commitdiff \| tree
2007-03-28	cjfields	is(), not ok()	commit \| commitdiff \| tree
2007-03-27	cjfields	reroute data flow through data_handler() for centralized...	commit \| commitdiff \| tree
2007-03-26	cjfields	pass data in chunks using element_hash()	commit \| commitdiff \| tree
2007-03-26	cjfields	tests changes and additions	commit \| commitdiff \| tree
2007-03-26	cjfields	add warnings for unsupported methods	commit \| commitdiff \| tree
2007-03-26	cjfields	rnamotif fixes	commit \| commitdiff \| tree
2007-03-26	cjfields	parsing fixes	commit \| commitdiff \| tree
2007-03-22	cjfields	bug 2246 tentative fix	commit \| commitdiff \| tree
2007-03-22	cjfields	bug 2245 (enhancement to allow relative paths for index...	commit \| commitdiff \| tree
2007-03-22	cjfields	fix some tests	commit \| commitdiff \| tree
2007-03-22	cjfields	test data for BIC tests	commit \| commitdiff \| tree
2007-03-21	cjfields	Removing redundant module; passes flat.t	commit \| commitdiff \| tree
2007-03-21	cjfields	bug 2242	commit \| commitdiff \| tree
2007-03-21	cjfields	Now passes v3 tests (at least the v3 output we have...)	commit \| commitdiff \| tree
2007-03-21	cjfields	Neil & Co.'s modified Signalp parser (bug 2203) - passes...	commit \| commitdiff \| tree
2007-03-20	cjfields	Changed throw() due to verbose output from Infernal...	commit \| commitdiff \| tree
2007-03-19	cjfields	TargetP parser, data, and tests	commit \| commitdiff \| tree
2007-03-19	cjfields	bug 2240	commit \| commitdiff \| tree
2007-03-16	cjfields	getter/setter for comment type (not implemented yet)	commit \| commitdiff \| tree
2007-03-16	cjfields	tests (write_seq() for drivers not implemented yet)	commit \| commitdiff \| tree
2007-03-16	cjfields	seq format drivers and single handler module for GenBank...	commit \| commitdiff \| tree
2007-03-16	cjfields	Handler-based parsing interface	commit \| commitdiff \| tree
2007-03-15	cjfields	Move to Test::More	commit \| commitdiff \| tree
2007-03-15	cjfields	moved to Test::More	commit \| commitdiff \| tree
2007-03-15	cjfields	move to Test::More	commit \| commitdiff \| tree
2007-03-15	cjfields	new signalp parser (need to merge code and tests for...	commit \| commitdiff \| tree
2007-03-15	cjfields	signalp test data	commit \| commitdiff \| tree
2007-03-15	cjfields	new signalp tests; change to Test::More	commit \| commitdiff \| tree
2007-03-14	cjfields	Move to Test::More	commit \| commitdiff \| tree
2007-03-14	cjfields	Fix which checks for BLAST header for text/tabular...	commit \| commitdiff \| tree
2007-03-13	cjfields	Bug 2221	commit \| commitdiff \| tree
2007-03-13	cjfields	TandemRepeatsFinder parser (bug 2233)	commit \| commitdiff \| tree
2007-03-08	cjfields	switch to XML::SAX (not heavily tested); this module...	commit \| commitdiff \| tree
2007-03-08	cjfields	params use '-'	commit \| commitdiff \| tree
2007-03-08	cjfields	add simple bracket_string() tests	commit \| commitdiff \| tree
2007-03-08	cjfields	D* tests to Test::More	commit \| commitdiff \| tree
2007-03-08	cjfields	Finish converting C* tests to Test::More	commit \| commitdiff \| tree
2007-03-08	cjfields	removed tests from old bracket_string method (will...	commit \| commitdiff \| tree
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