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Remove unused
2013-09-02
Bria
n
Osborne
Remove unused
commit
|
commitdiff
|
tree
2013-09-02
Br
i
a
n
Osb
o
rn
e
Corre
c
ted, all SearchIO
tests
p
ass
commit
|
commitdiff
|
tree
2013-09-02
Brian Osborne
Ba
c
k this ou
t
, related tests are
failing
commit
|
commitdiff
|
tree
2013-09-02
B
r
ia
n
Osbo
r
ne
Add
st
r
and()
s
o nhmmer can get stra
n
d data
commit
|
commitdiff
|
tree
2013-09-02
Brian
Osborne
Add partial support for nhmmer (version 3
.
1)
commit
|
commitdiff
|
tree
2013-07-12
Brian
O
s
b
orne
Bu
g
3415
commit
|
commitdiff
|
tree
2013-07-12
B
rian
O
sbor
n
e
Merge branch 'master'
of github
.
c
om:bioperl/bio
p
erl
.
.
.
commit
|
commitdiff
|
tree
2013-07-12
Brian Osborne
A
d
d dn
a
_to_aa_al
n
method and tests
commit
|
commitdiff
|
tree
2013-07-12
Br
i
an O
s
bor
n
e
Add support for ver
s
ion
4
,
all tests pas
s
commit
|
commitdiff
|
tree
2013-07-11
B
rian Osborne
B
io::Al
i
gnIO::fasta
w
as not always using
/>
\
s*(\S+
.
.
.
commit
|
commitdiff
|
tree
2013-04-10
Brian
Osborne
Add support
for v
e
rs
i
on 4
commit
|
commitdiff
|
tree
2013-01-06
Brian Osborn
e
Update,
c
orrect
commit
|
commitdiff
|
tree
2013-01-05
Brian O
s
b
or
n
e
T
idy and correc
t
do
c
s
commit
|
commitdiff
|
tree
2012-02-29
Brian
O
sb
o
rne
Fix typos
commit
|
commitdiff
|
tree
2012-02-28
Brian
Osborne
R
e
m
ove Nod
e
from
'use base', it's
u
nnecessa
r
y
commit
|
commitdiff
|
tree
2012-02-22
Brian Osborne
Nodes need the ne
w
() me
t
hod
commit
|
commitdiff
|
tree
2012-02-02
Brian Osbo
r
ne
Cla
r
ify the POD a bit
commit
|
commitdiff
|
tree
2012-02-02
Bri
a
n Osbo
r
n
e
Do
c
example
commit
|
commitdiff
|
tree
2012-02-02
B
rian
Osborne
T
y
p
o
s
commit
|
commitdiff
|
tree
2012-01-23
Brian Osborn
e
Mer
g
e branch
'ma
s
ter' of g
i
thub
.
com:
b
ioperl/
b
ioperl
.
.
.
commit
|
commitdiff
|
tree
2012-01-23
Brian Osborne
Create a unique using t
h
e percent
commit
|
commitdiff
|
tree
2011-12-09
Brian Osborne
Merg
e
branch 'master' of
github
.
com:bioperl
/
bio
p
erl
.
.
.
commit
|
commitdiff
|
tree
2011-11-25
Bri
a
n
O
s
bo
r
ne
Merge branch
'
m
a
s
ter' of github
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-11-14
B
r
i
an Os
b
orne
Merge branch 'mas
t
er' of github
.
com:biop
e
rl/bio
p
er
l
.
.
.
commit
|
commitdiff
|
tree
2011-10-10
B
rian Osborne
Mer
g
e b
r
an
c
h 'master' of github
.
com
:
bio
p
erl/bio
p
erl
.
.
.
commit
|
commitdiff
|
tree
2011-10-07
Brian Os
b
or
n
e
Fix
h
sp_l
e
ngth(),
it
w
a
s
returning twice the
l
e
ngth
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
Brian Osborne
POD fixes
commit
|
commitdiff
|
tree
2011-09-20
B
r
i
a
n Osborne
POD fixes
commit
|
commitdiff
|
tree
2011-09-20
Bri
a
n Osborne
A
d
d some example URLs, will add a t
e
st when
CUTG co
r
rects
.
.
.
commit
|
commitdiff
|
tree
2011-09-06
Brian Osb
o
rne
M
erge branch 'master
'
o
f
github
.
com:biope
r
l
/
biope
r
l
.
.
.
commit
|
commitdiff
|
tree
2011-09-06
Brian O
s
born
e
Typo
commit
|
commitdiff
|
tree
2011-08-25
Brian Osb
o
rne
C
o
mment out lines in
FT
H
elper th
a
t co
n
vert s
p
ecific
.
.
.
commit
|
commitdiff
|
tree
2011-07-05
Brian Osbo
r
ne
Minor edits to docs
commit
|
commitdiff
|
tree
2011-07-03
Brian Osborne
S
to
c
k
holm
.
pm did not work, fixed now
.
Add
t
ests
.
Make
.
.
.
commit
|
commitdiff
|
tree
2011-07-01
Brian Osb
o
rne
A
dd te
s
t for RPS-BLA
S
T algorithm
commit
|
commitdiff
|
tree
2011-06-24
Br
i
an
O
s
borne
M
e
rge branch 'master' of gi
t
hub
.
com:biope
r
l/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Brian Osbor
n
e
Don't restrict jus
t
to CDS featur
e
s
,
the feature m
a
y
.
.
.
commit
|
commitdiff
|
tree
2011-06-22
Br
i
a
n
Osborne
Merge branch
'
master
'
of githu
b
.
com:bioperl/
b
ioperl
.
.
.
commit
|
commitdiff
|
tree
2011-06-22
Brian Os
b
orne
Implement write_feature() in Featu
r
eIO::ptt
commit
|
commitdiff
|
tree
2010-05-27
Brian
Osborne
R
e
move unused Bio/
commit
|
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|
tree