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RemoteBlast_rpsblast.t: Fixed a few number of skipped tests,
2013-11-08
Fr
a
ncisco J
.
Ossa
n
don
Bio/DB/Fasta
.
pm: Small
Windows co
m
p
ati
b
ility fix i
n
.
.
.
commit
|
commitdiff
|
tree
2013-11-08
Francisco J
.
Ossandon
B
io/SeqFeatu
r
eI
.
pm: Changes to
s
p
liced_seq sequence
.
.
.
commit
|
commitdiff
|
tree
2013-11-08
Fr
a
ncisco J
.
Ossandon
Bio/
F
actory/FTLocationFacto
r
y
.
p
m
:
R
ef
i
ned logic
f
or
.
.
.
commit
|
commitdiff
|
tree
2013-11-08
Francisco J
.
Oss
a
ndon
Merge
r
emote b
r
anch 'upstream/master' i
n
t
o
test
commit
|
commitdiff
|
tree
2013-09-22
Francisc
o
J
.
O
ssandon
Bio
/
Prim
a
rySeq
.
pm: Fixed some
'un
i
niti
a
li
z
ed va
l
ue
.
.
.
commit
|
commitdiff
|
tree
2013-09-22
Fran
c
isco J
.
Ossandon
Merge
remote branch 'upstream/mast
e
r' into test
commit
|
commitdiff
|
tree
2013-09-22
Francisco J
.
Ossandon
Bio/SeqU
t
il
s
:
t
r
u
nc_with_fe
a
tures() and revcom_with_f
e
atures
(
)
commit
|
commitdiff
|
tree
2013-09-22
Francis
c
o J
.
Ossandon
F
i
x typ
i
ng errors
commit
|
commitdiff
|
tree
2013-09-18
Franci
s
co J
.
O
s
sandon
FTLocati
o
nFac
t
o
ry
.
pm: Fix
i
n
f
rom_string
(
)
f
o
r
so
m
e
.
.
.
commit
|
commitdiff
|
tree
2013-09-17
Francisco J
.
Ossando
n
Prim
a
rySe
q
I
.
pm: Avoid using Bio::R
o
ot::clone
w
h
e
n object
commit
|
commitdiff
|
tree
2013-09-17
Francisco J
.
Ossandon
M
erge r
e
mote branch 'ups
t
ream
/
master
'
i
n
to
t
e
s
t
commit
|
commitdiff
|
tree
2013-04-18
Fra
n
cisco J
.
Oss
a
ndon
PrimaryS
e
q
.
t: TO
D
O test
s
are
now fixed
.
All the other
.
.
.
commit
|
commitdiff
|
tree
2013-04-18
Francisco J
.
Ossandon
P
rimar
y
Seq
I
.
p
m: use Bio::Root::clone to make sur
e
that
.
.
.
commit
|
commitdiff
|
tree
2013-04-18
Fr
a
ncisco J
.
Ossa
n
don
Prim
a
rySe
q
.
pm/new: Changed
$i
s
_circular
t
est to use
.
.
.
commit
|
commitdiff
|
tree
2013-04-18
Francisco J
.
Ossandon
M
e
rge
remote
branch 'u
p
stream/maste
r
'
commit
|
commitdiff
|
tree
2013-04-15
Francisco J
.
O
ssandon
M
e
rge re
m
ote branch 'upst
r
eam/master'
commit
|
commitdiff
|
tree
2013-04-15
Franc
i
sco J
.
Os
s
ando
n
Ex
p
anded
s
o
me comments
commit
|
commitdiff
|
tree
2013-04-15
F
r
a
n
cisco J
.
Ossand
o
n
Added extensive testing for
the
intro
d
uced c
h
anges
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
Francis
c
o J
.
Ossandon
PrimaryS
e
q/subseq now
u
ses "guide
_
strand" for Split
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
Francisco J
.
O
s
s
a
ndon
S
p
l
it/
t
o_FTstring don't need to rev
e
rse sublocat
i
ons
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
Fr
a
ncisco
J
.
Ossandon
S
plit/g
u
ide
_
strand n
o
w
ma
k
es a consistency che
c
k of
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
F
r
ancisco J
.
Ossandon
Sp
l
it/flip_stra
n
d now makes a
s
trand consi
s
tency check
.
.
.
commit
|
commitdiff
|
tree
2013-04-15
Francisco
J
.
O
s
sandon
Initialize the Str
a
nd val
u
e if
mis
s
ing before pe
r
f
o
rming
.
.
.
commit
|
commitdiff
|
tree
2013-03-15
Francisco J
.
Ossandon
Fix
for
Bug #29
3
6
, n
o
w Split
.
pm/flip_stran
d
sets guide_stran
.
.
.
commit
|
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|
tree
2013-03-07
Francisco J
.
O
s
s
a
ndon
F
i
x for Bug #3251,
p
lu
s
f
i
xed a
c
ouple
of re
g
ular expression
.
.
.
commit
|
commitdiff
|
tree
2013-03-07
Franci
s
co
J
.
Ossandon
R
e
v
e
r
t "Fixed no
-
h
it
b
last bug a
n
d faul
t
y re
g
e
x
s, added
.
.
.
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