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Back this out, related tests are failing
2013-07-16
Brian Osborn
e
Bac
k
this out, relat
e
d tests are f
a
i
ling
commit
|
commitdiff
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tree
2013-07-16
Bria
n
Osborne
A
d
d strand() so nhmmer can get
s
trand data
commit
|
commitdiff
|
tree
2013-07-16
B
ria
n
Os
b
orne
Add partial
support for nhmmer (ve
r
si
o
n
3
.
1)
commit
|
commitdiff
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tree
2013-03-31
Br
i
an Osborne
Bug 3415
commit
|
commitdiff
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tree
2013-03-28
Brian Osborn
e
M
e
rge branch 'master' of
g
ith
u
b
.
com:biope
r
l/bio
p
er
l
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
Brian
O
sb
o
r
ne
Add dna_t
o
_aa_aln method and test
s
commit
|
commitdiff
|
tree
2013-03-26
Brian Osborne
M
erg
e
br
a
nch
'
master' of gi
t
hub
.
c
o
m:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2013-03-26
B
r
ian O
s
b
o
r
n
e
Add su
p
port for vers
i
on 4, al
l
t
ests pas
s
commit
|
commitdiff
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tree
2013-03-08
B
r
i
a
n Os
b
orne
M
erge branch 'master' of github
.
com:bioper
l
/bioperl
.
.
.
commit
|
commitdiff
|
tree
2013-03-08
Brian
O
sborne
Bio::AlignI
O
::fasta was not always using
/
>\s*
(
\
S
+
.
.
.
commit
|
commitdiff
|
tree
2013-01-06
Brian O
s
b
o
rne
U
pdate, correct
commit
|
commitdiff
|
tree
2013-01-05
Brian Osborne
Tid
y
and correct
do
c
s
commit
|
commitdiff
|
tree
2012-02-29
Brian Osb
o
r
n
e
Fi
x
ty
p
os
commit
|
commitdiff
|
tree
2012-02-28
Brian Osborne
Remove Node
from 'use base',
i
t
'
s
un
n
ecessar
y
commit
|
commitdiff
|
tree
2012-02-22
Brian Osborne
No
d
e
s
n
eed the new
(
) method
commit
|
commitdiff
|
tree
2012-02-02
Brian Osborne
Cla
r
i
fy the POD a bit
commit
|
commitdiff
|
tree
2012-02-02
Brian Os
b
orne
Doc example
commit
|
commitdiff
|
tree
2012-02-02
Brian Osborne
T
y
pos
commit
|
commitdiff
|
tree
2012-01-23
Bri
a
n Osborne
Merge b
r
anch 'master' of g
i
thub
.
com:biop
e
rl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2012-01-23
Bria
n
Osborne
Create a
u
nique using the percen
t
commit
|
commitdiff
|
tree
2011-12-09
Brian Osborne
Merge branch 'master' of github
.
com:b
i
operl/bi
o
p
er
l
.
.
.
commit
|
commitdiff
|
tree
2011-11-25
Brian
Osborne
Mer
g
e branch 'master
'
o
f
g
i
thub
.
com:bioperl/bi
o
perl
.
.
.
commit
|
commitdiff
|
tree
2011-11-14
Brian Osborne
Merge branch 'master' of github
.
com:bio
p
e
rl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-10-10
Brian Osborne
M
e
rge branch 'master' of github
.
com:bi
o
perl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-10-07
Brian
Osborne
Fix hsp_l
e
ngth(), it w
a
s retu
r
ni
n
g
t
w
i
ce the length
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
B
rian Osborne
POD
f
ixes
commit
|
commitdiff
|
tree
2011-09-20
Bria
n
Osborn
e
POD fix
e
s
commit
|
commitdiff
|
tree
2011-09-20
Brian Osb
o
rne
Add some example
U
RLs
,
will add a test when
CUTG c
o
r
r
ects
.
.
.
commit
|
commitdiff
|
tree
2011-09-06
Brian Osborne
M
e
rge branch 'master' of github
.
c
o
m:
b
i
o
per
l
/
biop
e
r
l
.
.
.
commit
|
commitdiff
|
tree
2011-09-06
Brian Osb
o
rne
Typo
commit
|
commitdiff
|
tree
2011-08-25
Brian Osborne
Commen
t
out l
i
n
e
s
in FTHelper that convert specif
i
c
.
.
.
commit
|
commitdiff
|
tree
2011-07-05
Brian
O
sborne
Minor
ed
i
ts to
docs
commit
|
commitdiff
|
tree
2011-07-03
Brian
Osborne
S
tockholm
.
pm
did not
w
ork, fi
x
ed now
.
Add
t
ests
.
M
a
ke
.
.
.
commit
|
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|
tree
2011-07-01
B
r
ian Osbor
n
e
A
dd
t
est
f
or RPS-BLAST al
g
o
r
i
thm
commit
|
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|
tree
2011-06-24
B
r
i
a
n
Os
b
orne
Merge
branch 'ma
s
ter' of gith
u
b
.
com:
b
ioper
l
/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
B
rian Osborne
Don't
r
e
s
trict
j
ust
to
CDS features, the
feature may
.
.
.
commit
|
commitdiff
|
tree
2011-06-22
Brian Osborne
Merg
e
branch 'm
a
ster' of github
.
com
:
bioperl/bi
o
perl
.
.
.
commit
|
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|
tree
2011-06-22
Brian
Osborne
Impl
e
ment write_f
e
ature() in
F
ea
t
ureIO::ptt
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|
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tree