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Back this out, related tests are failing
2013-07-16
B
rian Osbor
n
e
Back thi
s
o
u
t
, related test
s
are fail
i
ng
commit
|
commitdiff
|
tree
2013-07-16
Brian
O
s
b
o
r
n
e
Add strand() so nhm
m
er can get strand data
commit
|
commitdiff
|
tree
2013-07-16
Br
i
an Osborne
Add
partial support for nh
m
mer (ver
s
ion 3
.
1)
commit
|
commitdiff
|
tree
2013-03-31
Brian Osborne
Bug 3415
commit
|
commitdiff
|
tree
2013-03-28
Brian
O
sborne
Mer
g
e
b
ranc
h
'm
a
s
ter'
o
f
gith
u
b
.
c
om:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2013-03-28
Brian Osbo
r
ne
A
dd dna_to_
a
a
_
aln method and tests
commit
|
commitdiff
|
tree
2013-03-26
Brian Osborne
Merge branch 'master' o
f
github
.
com:bioperl/biope
r
l
.
.
.
commit
|
commitdiff
|
tree
2013-03-26
Bria
n
Osborne
Ad
d
support fo
r
version 4, all tests pas
s
commit
|
commitdiff
|
tree
2013-03-08
B
r
i
a
n
Osb
o
rne
Merge bran
c
h 'master
'
of git
h
ub
.
com:bi
o
p
erl/bio
p
erl
.
.
.
commit
|
commitdiff
|
tree
2013-03-08
Brian Osborne
Bi
o
::Al
i
gnIO::fasta was no
t
always us
i
ng />\s*(\S+
.
.
.
commit
|
commitdiff
|
tree
2013-01-06
Brian Osborne
Updat
e
, correct
commit
|
commitdiff
|
tree
2013-01-05
Bria
n
Osborn
e
Tid
y
and
correct docs
commit
|
commitdiff
|
tree
2012-02-29
Brian Osborne
Fix typos
commit
|
commitdiff
|
tree
2012-02-28
Brian Osborne
Remove Node fro
m
'use
b
ase', it's unnecess
a
ry
commit
|
commitdiff
|
tree
2012-02-22
B
rian Osborn
e
No
d
e
s
need
t
he new() method
commit
|
commitdiff
|
tree
2012-02-02
B
rian O
s
bo
r
ne
Clarif
y
the
P
OD a bit
commit
|
commitdiff
|
tree
2012-02-02
Brian
O
s
b
o
rne
Doc exa
m
ple
commit
|
commitdiff
|
tree
2012-02-02
Brian
O
s
b
orn
e
Typos
commit
|
commitdiff
|
tree
2012-01-23
Br
i
an
Osborne
Me
r
ge
bran
c
h 'master'
of github
.
co
m
:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2012-01-23
Bria
n
O
s
b
orne
Create a
unique using the
p
erc
e
nt
commit
|
commitdiff
|
tree
2011-12-09
Bria
n
Osborne
Merge b
r
anch 'maste
r
' of github
.
com:biop
e
r
l
/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-11-25
Bri
a
n Osbo
r
ne
Merge
b
ranch 'ma
s
ter'
of github
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-11-14
B
rian
O
sborn
e
M
e
rge branch
'
m
aster' of gi
t
hub
.
com:bioperl/b
i
operl
.
.
.
commit
|
commitdiff
|
tree
2011-10-10
Brian Osborne
M
e
r
g
e
b
ranch
'master'
of
g
ithub
.
com:bioper
l
/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-10-07
Brian
O
sborne
Fix hsp_length(), it was re
t
urn
i
ng twice
t
he length
.
.
.
commit
|
commitdiff
|
tree
2011-09-21
B
rian
O
s
borne
POD fi
x
es
commit
|
commitdiff
|
tree
2011-09-20
B
r
ian Osb
o
rne
POD fi
x
es
commit
|
commitdiff
|
tree
2011-09-20
Bri
a
n Osborne
Add some
example UR
L
s, wil
l
a
dd a
t
e
s
t
w
hen CUTG corr
e
c
ts
.
.
.
commit
|
commitdiff
|
tree
2011-09-06
Brian Osborne
M
er
g
e br
a
n
ch 'master' of github
.
com:bioperl/bioper
l
.
.
.
commit
|
commitdiff
|
tree
2011-09-06
B
rian
Osborne
T
ypo
commit
|
commitdiff
|
tree
2011-08-25
Bri
a
n
Os
b
orne
Comment
o
ut lines i
n
FTHelper that convert specif
i
c
.
.
.
commit
|
commitdiff
|
tree
2011-07-05
Brian Osborne
Minor edit
s
t
o
docs
commit
|
commitdiff
|
tree
2011-07-03
Brian
O
sborne
Stockholm
.
pm d
i
d not work
,
fixed now
.
Add tests
.
Make
.
.
.
commit
|
commitdiff
|
tree
2011-07-01
B
rian Osborne
Add
test for RPS-BLAS
T
algorithm
commit
|
commitdiff
|
tree
2011-06-24
Brian Os
b
orne
Merge
b
ra
n
ch 'master
'
of github
.
com:bioperl/bioperl
.
.
.
commit
|
commitdiff
|
tree
2011-06-24
Brian
O
s
bo
r
ne
Don't
r
e
stric
t
just
to CDS featur
e
s, the fea
t
ure ma
y
.
.
.
commit
|
commitdiff
|
tree
2011-06-22
Br
i
an Osbor
n
e
Mer
g
e
branch 'maste
r
' of github
.
com:bioperl/b
i
oper
l
.
.
.
commit
|
commitdiff
|
tree
2011-06-22
Brian Os
b
orne
Implement wri
t
e
_
feature()
i
n Featu
r
eIO::ptt
commit
|
commitdiff
|
tree
2010-05-27
Brian Osbor
n
e
Remove unused
B
io/
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|
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|
tree
