| 2017-03-15 |
Brian Osborne | Quick fix, speed up _strip_crnl() with tr
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commit | commitdiff | tree |
| 2017-03-11 |
Brian Osborne | Merge pull request #214 from bioperl/fix_get_taxonids
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commit | commitdiff | tree |
| 2017-03-11 |
Brian Osborne | Fix bug #212
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commit | commitdiff | tree |
| 2016-12-03 |
Brian Osborne | Change version, we're on 1.7 now
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commit | commitdiff | tree |
| 2016-11-27 |
Brian Osborne | Minor edits, for 'Debian: Typo and doc fixes #183'
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commit | commitdiff | tree |
| 2016-11-10 |
Brian Osborne | Merge pull request #208 from bioperl/make_new_dependencies
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commit | commitdiff | tree |
| 2016-11-10 |
Brian Osborne | Make new DEPENDENCIES file
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commit | commitdiff | tree |
| 2016-08-03 |
Brian Osborne | Merge pull request #191 from bioperl/fix-spellings
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commit | commitdiff | tree |
| 2016-08-03 |
Brian Osborne | Fix spellings
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commit | commitdiff | tree |
| 2016-05-09 |
Brian Osborne | Merge pull request #148 from bioperl/phylip-alignio-fix
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commit | commitdiff | tree |
| 2016-05-07 |
Brian Osborne | Length is correct, should not be part of TO DO
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commit | commitdiff | tree |
| 2016-05-07 |
Brian Osborne | Fixed bug 123, but there could be still be issues due...
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commit | commitdiff | tree |
| 2016-04-10 |
Brian Osborne | README is a duplicate, we don't want to maintain both
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commit | commitdiff | tree |
| 2016-04-10 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2016-04-10 |
Brian Osborne | URLify
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commit | commitdiff | tree |
| 2016-01-08 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2016-01-08 |
Brian Osborne | Add a sentence about the current version
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commit | commitdiff | tree |
| 2015-12-21 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2015-12-21 |
Brian Osborne | Remove ctrl M
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commit | commitdiff | tree |
| 2015-12-11 |
Brian Osborne | Update, matches the Web site version
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commit | commitdiff | tree |
| 2015-12-04 |
Brian Osborne | Make this INSTALL match the page on the Web site
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commit | commitdiff | tree |
| 2015-12-03 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2015-12-03 |
Brian Osborne | Correct Markdown, remove old text not concerning BioPerl...
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commit | commitdiff | tree |
| 2015-09-21 |
Brian Osborne | Correct test number
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commit | commitdiff | tree |
| 2015-09-21 |
Brian Osborne | Add 'desc' to table format
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commit | commitdiff | tree |
| 2015-06-21 |
Brian Osborne | Simplify and update the README
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commit | commitdiff | tree |
| 2015-06-21 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2015-06-21 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2015-06-21 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2015-06-21 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2015-06-21 |
Brian Osborne | No need to clone Bio-Root
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commit | commitdiff | tree |
| 2015-06-21 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2015-06-20 |
Brian Osborne | Sync README and README.md
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commit | commitdiff | tree |
| 2015-06-20 |
Brian Osborne | Travis no longer needs to clone Bio-Root
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commit | commitdiff | tree |
| 2015-06-20 |
Brian Osborne | Correct 'directory' section
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commit | commitdiff | tree |
| 2015-06-20 |
Brian Osborne | Simplify Contact info section
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commit | commitdiff | tree |
| 2015-06-20 |
Brian Osborne | Add Root back, plus some test and doc fixes
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commit | commitdiff | tree |
| 2014-12-23 |
Brian Osborne | Handle Structured Comments correctly by keeping them...
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commit | commitdiff | tree |
| 2014-10-29 |
Brian Osborne | Add for test
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commit | commitdiff | tree |
| 2014-10-28 |
Brian Osborne | Add tests for bug #88, spliced_seq()
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commit | commitdiff | tree |
| 2014-10-28 |
Brian Osborne | Eric Snyder's bug fix for spliced_seq() error on reverse...
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Simplify some code
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Couple more minor edits ...
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Update to OBO Flat File Format Specification, version...
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Reformat, correct docs, for legibility
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commit | commitdiff | tree |
| 2014-09-15 |
Brian Osborne | Minor doc fixes
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commit | commitdiff | tree |
| 2014-09-15 |
Brian Osborne | Add ability to remove specific features, using primary_tag
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commit | commitdiff | tree |
| 2014-07-14 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2014-07-14 |
Brian Osborne | Add to documentation, reorganize code a bit
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commit | commitdiff | tree |
| 2014-04-23 |
Brian Osborne | Minor POD edits
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commit | commitdiff | tree |
| 2014-04-08 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2014-03-18 |
Brian Osborne | Used quoted strings in Bio::Species to avoid a 'Invalid...
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commit | commitdiff | tree |
| 2014-02-15 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2014-02-15 |
Brian Osborne | Update
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commit | commitdiff | tree |
| 2014-01-02 |
Brian Osborne | Minor edit, die message
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commit | commitdiff | tree |
| 2013-12-31 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-12-31 |
Brian Osborne | Edited SeqIO::genbank::_print_GenBank_FTHelper for...
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commit | commitdiff | tree |
| 2013-09-25 |
Brian Osborne | Fix to alignment regex
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commit | commitdiff | tree |
| 2013-09-20 |
Brian Osborne | Reformatting and editing
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commit | commitdiff | tree |
| 2013-09-17 |
Brian Osborne | Set the EUtils URL in NCBIHelper, inherit in entrez...
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commit | commitdiff | tree |
| 2013-09-13 |
Brian Osborne | Change regexp to handle degenerate chars, all tests...
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commit | commitdiff | tree |
| 2013-08-24 |
Brian Osborne | Correct regexp on line 131, all tests pass
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commit | commitdiff | tree |
| 2013-08-24 |
Brian Osborne | Minor doc change
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commit | commitdiff | tree |
| 2013-08-24 |
Brian Osborne | Minor doc change
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commit | commitdiff | tree |
| 2013-07-18 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-07-18 |
Brian Osborne | Fix warning, 'inclusion threshold'
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commit | commitdiff | tree |
| 2013-07-17 |
Brian Osborne | Sorry about this, analyzing new output files is leading...
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Minor regex change
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Remove unused
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Corrected, all SearchIO tests pass
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Back this out, related tests are failing
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Add strand() so nhmmer can get strand data
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Add partial support for nhmmer (version 3.1)
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commit | commitdiff | tree |
| 2013-03-31 |
Brian Osborne | Bug 3415
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commit | commitdiff | tree |
| 2013-03-28 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-03-28 |
Brian Osborne | Add dna_to_aa_aln method and tests
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commit | commitdiff | tree |
| 2013-03-26 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-03-26 |
Brian Osborne | Add support for version 4, all tests pass
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commit | commitdiff | tree |
| 2013-03-08 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-03-08 |
Brian Osborne | Bio::AlignIO::fasta was not always using />\s*(\S+...
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commit | commitdiff | tree |
| 2013-01-06 |
Brian Osborne | Update, correct
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commit | commitdiff | tree |
| 2013-01-05 |
Brian Osborne | Tidy and correct docs
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commit | commitdiff | tree |
| 2012-02-29 |
Brian Osborne | Fix typos
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commit | commitdiff | tree |
| 2012-02-28 |
Brian Osborne | Remove Node from 'use base', it's unnecessary
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commit | commitdiff | tree |
| 2012-02-22 |
Brian Osborne | Nodes need the new() method
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commit | commitdiff | tree |
| 2012-02-02 |
Brian Osborne | Clarify the POD a bit
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commit | commitdiff | tree |
| 2012-02-02 |
Brian Osborne | Doc example
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commit | commitdiff | tree |
| 2012-02-02 |
Brian Osborne | Typos
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commit | commitdiff | tree |
| 2012-01-23 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2012-01-23 |
Brian Osborne | Create a unique using the percent
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commit | commitdiff | tree |
| 2011-12-09 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-11-25 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-11-14 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-10-10 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-10-07 |
Brian Osborne | Fix hsp_length(), it was returning twice the length...
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commit | commitdiff | tree |
| 2011-09-21 |
Brian Osborne | POD fixes
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commit | commitdiff | tree |
| 2011-09-20 |
Brian Osborne | POD fixes
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commit | commitdiff | tree |
| 2011-09-20 |
Brian Osborne | Add some example URLs, will add a test when CUTG corrects...
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commit | commitdiff | tree |
| 2011-09-06 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
