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sync last commit
2009-01-21
cjfields
sync
last com
m
it
commit
|
commitdiff
|
tree
2009-01-21
cjfields
*
sync
w
ith trunk
commit
|
commitdiff
|
tree
2009-01-21
cjfields
* sync
w
it
h
trunk
commit
|
commitdiff
|
tree
2009-01-21
c
j
fields
* delete Bio::DB::Se
q
Fe
a
t
ure::Stor
e
::DBI::Pg per Scott
.
.
.
commit
|
commitdiff
|
tree
2009-01-20
c
jfields
sync
with
m
a
in trun
k
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Inc
.
RC version
commit
|
commitdiff
|
tree
2009-01-16
cjfields
carry over tes
t
fixe
s
from trunk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Ca
r
r
y over test chan
g
e
f
ro
m
ma
i
n tr
u
nk
commit
|
commitdiff
|
tree
2009-01-16
cjfields
Syn
c
with main trunk
commit
|
commitdiff
|
tree
2009-01-13
cjfields
Sync with main trunk
commit
|
commitdiff
|
tree
2009-01-13
c
j
fie
l
d
s
Sync with main trunk
commit
|
commitdiff
|
tree
2009-01-06
cjfi
e
lds
S
y
nc with tru
n
k
.
Th
i
s wi
l
l ap
p
ear in final release
.
commit
|
commitdiff
|
tree
2009-01-06
c
j
fields
Resolve conflict (c
a
n'
t
directly
merge since trunk
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
c
jf
i
e
l
ds
Syn
c
that last b
i
t with trunk
.
I
'll have
to merge
.
.
.
commit
|
commitdiff
|
tree
2009-01-06
cjf
i
elds
Sync with
tru
n
k
commit
|
commitdiff
|
tree
2009-01-05
cjfields
Bump RC to 2; will tag,
b
ag, and ship tomorrow after
.
.
.
commit
|
commitdiff
|
tree
2009-01-05
cjfie
l
ds
Sync with trunk
commit
|
commitdiff
|
tree
2009-01-04
cjfi
e
lds
sy
n
c wi
t
h trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfie
l
ds
sync
f
r
o
m
trunk
commit
|
commitdiff
|
tree
2009-01-02
cjfields
syn
c
last commit
commit
|
commitdiff
|
tree
2009-01-02
c
jfields
s
y
nc with HEAD
commit
|
commitdiff
|
tree
2009-01-02
cjfields
Remove t/Graphics
commit
|
commitdiff
|
tree
2009-01-02
cjf
i
elds
Remove
B
io::G
r
aph
i
c
s examples
a
nd sc
r
i
p
ts
commit
|
commitdiff
|
tree
2008-12-26
c
j
f
i
e
ld
s
empty
d
irectory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
E
m
p
t
y
d
irectory
commit
|
commitdiff
|
tree
2008-12-26
cjfiel
d
s
empty directory
commit
|
commitdiff
|
tree
2008-12-26
cjf
i
elds
sync with trunk
commit
|
commitdiff
|
tree
2008-12-24
cj
f
ields
small clarif
i
ca
t
ion
commit
|
commitdiff
|
tree
2008-12-24
cjfields
A
dd list of bugs slated
for t
h
e 1
.
6
.
x series
commit
|
commitdiff
|
tree
2008-12-24
c
jfields
Updates for RC1
commit
|
commitdiff
|
tree
2008-12-24
cjfields
remove
M
i
croarray deps
commit
|
commitdiff
|
tree
2008-12-24
cjfields
Small fi
x
fo
r
te
s
ts JIC th
e
re
i
s a network
e
rr
o
r
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
d
s
Sync b
r
an
c
h with trunk
commit
|
commitdiff
|
tree
2008-12-24
cjfie
l
d
s
Remove Bio::M
i
cr
o
array from
b
ranch (still
i
n de
v
elopment
.
.
.
commit
|
commitdiff
|
tree
2008-12-24
cjfields
R
e
move
(
merge d
i
dn
'
t
remove this f
o
r
som
e
reason)
commit
|
commitdiff
|
tree
2008-12-24
cjfi
e
l
d
s
Remove
(
merge d
i
dn't remove this for
some reason)
commit
|
commitdiff
|
tree
2008-12-22
cjfields
sync trun
k
with branch
commit
|
commitdiff
|
tree
2008-12-20
cjfield
s
5
.
6
.
1 is min
perl v
e
rsi
o
n
require
d
for all core modules
n
ow
commit
|
commitdiff
|
tree
2008-12-19
cjfiel
d
s
u
p
d
a
t
e NA
M
ES
commit
|
commitdiff
|
tree
2008-12-19
cjf
i
elds
s
mall typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
typo
commit
|
commitdiff
|
tree
2008-12-18
cjfields
[
b
ug 2714]
commit
|
commitdiff
|
tree
2008-12-17
cjfields
f
ix test numb
e
r
commit
|
commitdiff
|
tree
2008-12-17
cjfields
update Test::Warn (fix
e
s Qual
.
t t
e
s
t problem
s
with
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cj
f
ields
m
i
s
s
ed o
n
e
commit
|
commitdiff
|
tree
2008-12-16
cjfields
EUtilities remote tests back on
l
in
e
(s
i
mple
tests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
E
U
t
i
lities remote tests b
a
ck online (si
m
ple
t
ests only)
commit
|
commitdiff
|
tree
2008-12-16
cjfield
s
You must actually test
d
a
ta i
f
y
o
u
w
ant this module
.
.
.
commit
|
commitdiff
|
tree
2008-12-16
cjfields
D
o
n
't use pri
n
t! C
h
anging to $
s
elf-
>
debug or comment
i
n
g
out
commit
|
commitdiff
|
tree
2008-12-16
cjfields
B
i
o::Graph
d
epre
c
ated in 1
.
6
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
ds
stifle warnings when passi
n
g string
i
n
stead of integer
commit
|
commitdiff
|
tree
2008-12-16
c
jfield
s
h
a
s
h
ref, not ar
r
ay re
f
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug 26
3
7]
commit
|
commitdiff
|
tree
2008-12-16
cjfields
[bug
2
6
37]
commit
|
commitdiff
|
tree
2008-12-16
c
j
fiel
d
s
[bug 2637]
commit
|
commitdiff
|
tree
2008-12-16
cjfie
l
d
s
[b
u
g 2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[bug
2637]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
[b
u
g 2712]
commit
|
commitdiff
|
tree
2008-12-15
cjfields
score
s
commit
|
commitdiff
|
tree
2008-12-15
cjfi
e
lds
remaining tests for Bio::Too
l
::
E
Utilities
commit
|
commitdiff
|
tree
2008-12-15
cjfields
more test d
a
ta
commit
|
commitdiff
|
tree
2008-12-15
cj
f
ield
s
Updates:
commit
|
commitdiff
|
tree
2008-12-13
cjfields
ini
t
ial batch of EUtilParameters tests
commit
|
commitdiff
|
tree
2008-12-13
cjfields
e
i
n
fo tests
commit
|
commitdiff
|
tree
2008-12-12
cjf
i
elds
some EUtilities tests (parsing from f
i
l
es)
commit
|
commitdiff
|
tree
2008-12-12
c
jfi
e
lds
some
t
e
st d
a
ta for Bio::
T
ools::
E
Util
i
ties
commit
|
commitdiff
|
tree
2008-12-12
c
j
fields
updates to EUtilities (g
e
tt
i
ng ready fo
r
doc
s
,
t
ests
.
.
.
commit
|
commitdiff
|
tree
2008-12-12
cj
f
iel
d
s
Move EUtilP
a
r
a
meters
to Tools (
s
eems more appropriate)
commit
|
commitdiff
|
tree
2008-12-11
c
j
f
i
elds
f
i
x for b
u
g when getting cached response
w
i
th fil
e
name
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
c
jfield
s
small poin
t
er to wiki page (will
u
pdate along with
.
.
.
commit
|
commitdiff
|
tree
2008-12-11
cjfiel
d
s
small update
commit
|
commitdiff
|
tree
2008-12-11
cjfield
s
upda
t
es
commit
|
commitdiff
|
tree
2008-12-11
cjf
i
e
lds
return, not 'return undef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
r
eturn, not 'return un
d
ef'
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
c
jfiel
d
s
[bug 2699]
commit
|
commitdiff
|
tree
2008-12-11
cjfields
[bug
2
707]
commit
|
commitdiff
|
tree
2008-12-10
cj
f
ields
Removing from HE
A
D (deprecated for 1
.
6)
commit
|
commitdiff
|
tree
2008-12-10
cjf
i
elds
m
i
ni
pod fix
commit
|
commitdiff
|
tree
2008-12-10
c
jfields
update de
p
r
e
cation list
commit
|
commitdiff
|
tree
2008-12-10
cj
f
i
e
l
d
s
remove Bio:
:
Gra
p
hics (separate package now)
commit
|
commitdiff
|
tree
2008-12-10
c
j
fie
l
ds
[bug
263
7
]
commit
|
commitdiff
|
tree
2008-12-10
c
jfi
e
lds
Remove dependencies for
B
io::Graphics an
d
depr
e
cated
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
e
lds
S
quash warn
i
ng
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
d
i
ag()
only on verbose
commit
|
commitdiff
|
tree
2008-12-09
cjfields
Fix last
l
oo
p
t
e
sts, move so
m
e to ca
n
_ok
commit
|
commitdiff
|
tree
2008-12-09
c
j
fi
e
ld
s
Modify to test new temp c
l
asses and ensure t
h
a
t
ad
d
ed
.
.
.
commit
|
commitdiff
|
tree
2008-12-09
cjf
i
elds
u
pdate Ma
u
ricio's email
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Upd
a
te Roy's email
commit
|
commitdiff
|
tree
2008-12-08
c
jfiel
d
s
R
o
y
'
s email
(
a
nd biope
r
l
.
org not biop
e
rl
.
e
d
u)
commit
|
commitdiff
|
tree
2008-12-08
cjfields
Updated emails
commit
|
commitdiff
|
tree
2008-12-07
cjfields
[bu
g
269
9
]
commit
|
commitdiff
|
tree
2008-12-05
cjfields
Need to r
e
triev
e
t
he
t
r
e
e
f
or
o
u
tput
commit
|
commitdiff
|
tree
2008-12-05
cjfields
[bug 2450]
commit
|
commitdiff
|
tree
2008-12-04
c
jfields
Ma
k
e Target a
t
rue D
B
Link
commit
|
commitdiff
|
tree
2008-12-04
c
jfields
Di
r
ectory is no lon
g
e
r needed
(
H
e
i
kki split this up
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfi
e
lds
add force_ns
e
tests
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
leave
I
D
u
nd
e
fi
n
e
d
if it isn
'
t
pr
e
sent, but allo
w
th
e
.
.
.
commit
|
commitdiff
|
tree
2008-12-03
cjfields
Remove f
i
l
e
s ac
c
ide
n
tly a
d
ded from last
co
m
mit
commit
|
commitdiff
|
tree
2008-12-03
cjf
i
elds
Reorgani
z
e Tool
s
tests (n
e
e
ds some
more splitting)
commit
|
commitdiff
|
tree
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