| 2015-06-20 |
Brian Osborne | Add Root back, plus some test and doc fixes
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commit | commitdiff | tree |
| 2014-12-23 |
Brian Osborne | Handle Structured Comments correctly by keeping them...
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commit | commitdiff | tree |
| 2014-10-29 |
Brian Osborne | Add for test
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commit | commitdiff | tree |
| 2014-10-28 |
Brian Osborne | Add tests for bug #88, spliced_seq()
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commit | commitdiff | tree |
| 2014-10-28 |
Brian Osborne | Eric Snyder's bug fix for spliced_seq() error on reverse...
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Simplify some code
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Couple more minor edits ...
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Update to OBO Flat File Format Specification, version...
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2014-09-28 |
Brian Osborne | Reformat, correct docs, for legibility
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commit | commitdiff | tree |
| 2014-09-15 |
Brian Osborne | Minor doc fixes
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commit | commitdiff | tree |
| 2014-09-15 |
Brian Osborne | Add ability to remove specific features, using primary_tag
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commit | commitdiff | tree |
| 2014-07-14 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2014-07-14 |
Brian Osborne | Add to documentation, reorganize code a bit
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commit | commitdiff | tree |
| 2014-04-23 |
Brian Osborne | Minor POD edits
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commit | commitdiff | tree |
| 2014-04-08 |
Brian Osborne | Minor edits
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commit | commitdiff | tree |
| 2014-03-18 |
Brian Osborne | Used quoted strings in Bio::Species to avoid a 'Invalid...
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commit | commitdiff | tree |
| 2014-02-15 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2014-02-15 |
Brian Osborne | Update
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commit | commitdiff | tree |
| 2014-01-02 |
Brian Osborne | Minor edit, die message
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commit | commitdiff | tree |
| 2013-12-31 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-12-31 |
Brian Osborne | Edited SeqIO::genbank::_print_GenBank_FTHelper for...
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commit | commitdiff | tree |
| 2013-09-25 |
Brian Osborne | Fix to alignment regex
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commit | commitdiff | tree |
| 2013-09-20 |
Brian Osborne | Reformatting and editing
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commit | commitdiff | tree |
| 2013-09-17 |
Brian Osborne | Set the EUtils URL in NCBIHelper, inherit in entrez...
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commit | commitdiff | tree |
| 2013-09-13 |
Brian Osborne | Change regexp to handle degenerate chars, all tests...
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commit | commitdiff | tree |
| 2013-08-24 |
Brian Osborne | Correct regexp on line 131, all tests pass
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commit | commitdiff | tree |
| 2013-08-24 |
Brian Osborne | Minor doc change
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commit | commitdiff | tree |
| 2013-08-24 |
Brian Osborne | Minor doc change
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commit | commitdiff | tree |
| 2013-07-18 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-07-18 |
Brian Osborne | Fix warning, 'inclusion threshold'
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commit | commitdiff | tree |
| 2013-07-17 |
Brian Osborne | Sorry about this, analyzing new output files is leading...
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Minor regex change
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Remove unused
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Corrected, all SearchIO tests pass
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Back this out, related tests are failing
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Add strand() so nhmmer can get strand data
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commit | commitdiff | tree |
| 2013-07-16 |
Brian Osborne | Add partial support for nhmmer (version 3.1)
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commit | commitdiff | tree |
| 2013-03-31 |
Brian Osborne | Bug 3415
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commit | commitdiff | tree |
| 2013-03-28 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-03-28 |
Brian Osborne | Add dna_to_aa_aln method and tests
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commit | commitdiff | tree |
| 2013-03-26 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-03-26 |
Brian Osborne | Add support for version 4, all tests pass
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commit | commitdiff | tree |
| 2013-03-08 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2013-03-08 |
Brian Osborne | Bio::AlignIO::fasta was not always using />\s*(\S+...
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commit | commitdiff | tree |
| 2013-01-06 |
Brian Osborne | Update, correct
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commit | commitdiff | tree |
| 2013-01-05 |
Brian Osborne | Tidy and correct docs
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commit | commitdiff | tree |
| 2012-02-29 |
Brian Osborne | Fix typos
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commit | commitdiff | tree |
| 2012-02-28 |
Brian Osborne | Remove Node from 'use base', it's unnecessary
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commit | commitdiff | tree |
| 2012-02-22 |
Brian Osborne | Nodes need the new() method
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commit | commitdiff | tree |
| 2012-02-02 |
Brian Osborne | Clarify the POD a bit
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commit | commitdiff | tree |
| 2012-02-02 |
Brian Osborne | Doc example
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commit | commitdiff | tree |
| 2012-02-02 |
Brian Osborne | Typos
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commit | commitdiff | tree |
| 2012-01-23 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2012-01-23 |
Brian Osborne | Create a unique using the percent
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commit | commitdiff | tree |
| 2011-12-09 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-11-25 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-11-14 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-10-10 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-10-07 |
Brian Osborne | Fix hsp_length(), it was returning twice the length...
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commit | commitdiff | tree |
| 2011-09-21 |
Brian Osborne | POD fixes
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commit | commitdiff | tree |
| 2011-09-20 |
Brian Osborne | POD fixes
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commit | commitdiff | tree |
| 2011-09-20 |
Brian Osborne | Add some example URLs, will add a test when CUTG corrects...
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commit | commitdiff | tree |
| 2011-09-06 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-09-06 |
Brian Osborne | Typo
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commit | commitdiff | tree |
| 2011-08-25 |
Brian Osborne | Comment out lines in FTHelper that convert specific...
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commit | commitdiff | tree |
| 2011-07-05 |
Brian Osborne | Minor edits to docs
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commit | commitdiff | tree |
| 2011-07-03 |
Brian Osborne | Stockholm.pm did not work, fixed now. Add tests. Make...
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commit | commitdiff | tree |
| 2011-07-01 |
Brian Osborne | Add test for RPS-BLAST algorithm
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commit | commitdiff | tree |
| 2011-06-24 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-06-24 |
Brian Osborne | Don't restrict just to CDS features, the feature may...
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commit | commitdiff | tree |
| 2011-06-22 |
Brian Osborne | Merge branch 'master' of github.com:bioperl/bioperl...
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commit | commitdiff | tree |
| 2011-06-22 |
Brian Osborne | Implement write_feature() in FeatureIO::ptt
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commit | commitdiff | tree |
| 2010-05-27 |
Brian Osborne | Remove unused Bio/
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