| 2007-07-16 |
cjfields | is, not ok
|
commit | commitdiff | tree |
| 2007-07-16 |
cjfields | bug 2282
|
commit | commitdiff | tree |
| 2007-07-16 |
cjfields | use CORE::close() to close file
|
commit | commitdiff | tree |
| 2007-07-16 |
cjfields | test out getting rid of some of the multiple regex...
|
commit | commitdiff | tree |
| 2007-07-16 |
cjfields | bug 1986 and GCG BLAST fixes (got the TODO working)
|
commit | commitdiff | tree |
| 2007-07-16 |
cjfields | bug 1986 (part deux)
|
commit | commitdiff | tree |
| 2007-07-15 |
cjfields | bug 1986 (second bit)
|
commit | commitdiff | tree |
| 2007-07-15 |
cjfields | bug 1986 tests
|
commit | commitdiff | tree |
| 2007-07-15 |
cjfields | BPLite (and ilk) deprecated
|
commit | commitdiff | tree |
| 2007-07-15 |
cjfields | unnecessary use Carp
|
commit | commitdiff | tree |
| 2007-07-15 |
cjfields | small fix to deal with attribute-less GFF files (prob...
|
commit | commitdiff | tree |
| 2007-07-15 |
cjfields | partial fix for bug 1986
|
commit | commitdiff | tree |
| 2007-07-09 |
cjfields | Use double quotes to interpolate
|
commit | commitdiff | tree |
| 2007-07-09 |
cjfields | $value is undef in some cases (apparently from GBrowseGFF...
|
commit | commitdiff | tree |
| 2007-07-09 |
cjfields | eutils fixes
|
commit | commitdiff | tree |
| 2007-07-06 |
cjfields | Must allow other SearchIO readmethods (anything that...
|
commit | commitdiff | tree |
| 2007-07-03 |
cjfields | lightweight HistoryI holder (used in a queue in place...
|
commit | commitdiff | tree |
| 2007-07-03 |
cjfields | introduce lightweight HistoryI (aka cookies) to decouple...
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | Changed class name to something more relevant
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | A few changes; changed poorly named GenericWebDBI to...
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2321
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2325
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2262
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2262 (add caveat, TODO about Meta::Array interface...
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2305
|
commit | commitdiff | tree |
| 2007-07-02 |
cjfields | bug 2288
|
commit | commitdiff | tree |
| 2007-07-01 |
cjfields | bug 2317
|
commit | commitdiff | tree |
| 2007-07-01 |
cjfields | bug 2299
|
commit | commitdiff | tree |
| 2007-07-01 |
cjfields | bug 2295
|
commit | commitdiff | tree |
| 2007-06-28 |
cjfields | Add optional history queueing, other things
|
commit | commitdiff | tree |
| 2007-06-28 |
cjfields | added a few new methods
|
commit | commitdiff | tree |
| 2007-06-26 |
cjfields | obsolete (functionality moved to Bio::Tools::EUtilities)
|
commit | commitdiff | tree |
| 2007-06-26 |
cjfields | commits for overhaul (finally got POST working)
|
commit | commitdiff | tree |
| 2007-06-25 |
cjfields | Implement eutils callbacks, iterator generation, lazy...
|
commit | commitdiff | tree |
| 2007-06-25 |
cjfields | Cleaning up API, need to clean up POD and make callbacks...
|
commit | commitdiff | tree |
| 2007-06-23 |
cjfields | eutils parsers, part of EUtilities overhaul (still...
|
commit | commitdiff | tree |
| 2007-06-19 |
cjfields | taking tests offline for the time being until I finish...
|
commit | commitdiff | tree |
| 2007-06-14 |
cjfields | Removed two tests; the warning that these tests caught...
|
commit | commitdiff | tree |
| 2007-06-07 |
cjfields | Some more fixes for bug 2305
|
commit | commitdiff | tree |
| 2007-06-05 |
cjfields | Partial fix for bug 2305
|
commit | commitdiff | tree |
| 2007-06-05 |
cjfields | prettify verbose warnings a little more
|
commit | commitdiff | tree |
| 2007-05-21 |
cjfields | Remove incomplete module (OK'd per Allen Day)
|
commit | commitdiff | tree |
| 2007-05-12 |
cjfields | initial commit; part of EUtilities overhaul
|
commit | commitdiff | tree |
| 2007-05-08 |
cjfields | small comment for tracking bug 1986
|
commit | commitdiff | tree |
| 2007-05-08 |
cjfields | New generic interface encapsulating parameters and...
|
commit | commitdiff | tree |
| 2007-05-01 |
cjfields | small bug fixes
|
commit | commitdiff | tree |
| 2007-05-01 |
cjfields | Update on v.0.81 output; will try to add parsing support...
|
commit | commitdiff | tree |
| 2007-04-27 |
cjfields | possible fix for bug 2279
|
commit | commitdiff | tree |
| 2007-04-20 |
cjfields | revamping eutils tests; ramping up for refactoring
|
commit | commitdiff | tree |
| 2007-04-19 |
cjfields | Fix for recent DB.t woes
|
commit | commitdiff | tree |
| 2007-04-19 |
cjfields | separate ID string generation into a private method
|
commit | commitdiff | tree |
| 2007-04-17 |
cjfields | change odd messages to diag(); use isa_ok(), not ok...
|
commit | commitdiff | tree |
| 2007-04-16 |
cjfields | cleanup and convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | bug 2271
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | bug 2272
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | fix Location.t; MitoProt.t now runs under BIOPERLDEBUG=1
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | forgot to uncomment
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More convesion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup from Test::More conversion
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | Small DB.t fixes; GenBank query is failing but may...
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | convert to Test::More; IMAGE_TESTS seem to fail but...
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-13 |
cjfields | cleanup tests; set network tests so they won't run...
|
commit | commitdiff | tree |
| 2007-04-12 |
cjfields | Convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-12 |
cjfields | cleanup cruft
|
commit | commitdiff | tree |
| 2007-04-12 |
cjfields | moved to Test::More
|
commit | commitdiff | tree |
| 2007-04-12 |
cjfields | bug 2270
|
commit | commitdiff | tree |
| 2007-04-12 |
cjfields | move to Test::More
|
commit | commitdiff | tree |
| 2007-04-12 |
cjfields | Finish M-N (convert to Test::More)
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | Don't forget lucy!
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | Finished L's (move to Test::More)
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | Convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | convert to Test::More
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | select_noncont() sorts numerically by default (fixed...
|
commit | commitdiff | tree |
| 2007-04-11 |
cjfields | bug 2264, 2265
|
commit | commitdiff | tree |
| 2007-04-05 |
cjfields | bug 2263
|
commit | commitdiff | tree |
| 2007-04-02 |
cjfields | write_seq() is not implemented
|
commit | commitdiff | tree |
| 2007-04-02 |
cjfields | bug 2246
|
commit | commitdiff | tree |
| 2007-04-02 |
cjfields | bug 2237
|
commit | commitdiff | tree |
| 2007-03-30 |
cjfields | Small bug which botches some report parsing
|
commit | commitdiff | tree |
| 2007-03-29 |
cjfields | Fix '.' being appended to scientific_name
|
commit | commitdiff | tree |
| 2007-03-28 |
cjfields | is(), not ok()
|
commit | commitdiff | tree |
| 2007-03-27 |
cjfields | reroute data flow through data_handler() for centralized...
|
commit | commitdiff | tree |
| 2007-03-26 |
cjfields | pass data in chunks using element_hash()
|
commit | commitdiff | tree |
| 2007-03-26 |
cjfields | tests changes and additions
|
commit | commitdiff | tree |
| 2007-03-26 |
cjfields | add warnings for unsupported methods
|
commit | commitdiff | tree |
| 2007-03-26 |
cjfields | rnamotif fixes
|
commit | commitdiff | tree |
| 2007-03-26 |
cjfields | parsing fixes
|
commit | commitdiff | tree |
| 2007-03-22 |
cjfields | bug 2246 tentative fix
|
commit | commitdiff | tree |
