From d98d5ad3ceb47e672cf891df0c9ee6a62b059efd Mon Sep 17 00:00:00 2001 From: Hugo Devillers Date: Fri, 17 Apr 2020 10:07:32 +0200 Subject: [PATCH] Update %FTQUAL_NO_QUOTE: List of qualifiers without quote. --- lib/Bio/SeqIO/embl.pm | 4 ++++ lib/Bio/SeqIO/embldriver.pm | 4 +++- lib/Bio/SeqIO/gbdriver.pm | 4 +++- lib/Bio/SeqIO/genbank.pm | 4 +++- 4 files changed, 13 insertions(+), 3 deletions(-) diff --git a/lib/Bio/SeqIO/embl.pm b/lib/Bio/SeqIO/embl.pm index bac440444..8277b868e 100644 --- a/lib/Bio/SeqIO/embl.pm +++ b/lib/Bio/SeqIO/embl.pm @@ -139,14 +139,18 @@ use base qw(Bio::SeqIO); 'citation'=>1, 'codon'=>1, 'codon_start'=>1, + 'compare'=>1, 'cons_splice'=>1, 'direction'=>1, + 'estimated_length'=>1, 'evidence'=>1, 'label'=>1, 'mod_base'=> 1, 'number'=> 1, 'rpt_type'=> 1, 'rpt_unit'=> 1, + 'rpt_unit_range'=>1, + 'tag_peptide'=>1, 'transl_except'=> 1, 'transl_table'=> 1, 'usedin'=> 1, diff --git a/lib/Bio/SeqIO/embldriver.pm b/lib/Bio/SeqIO/embldriver.pm index 3d1b2c5c4..5b0903b27 100644 --- a/lib/Bio/SeqIO/embldriver.pm +++ b/lib/Bio/SeqIO/embldriver.pm @@ -127,10 +127,12 @@ use base qw(Bio::SeqIO); my %FTQUAL_NO_QUOTE = map {$_ => 1} qw( anticodon citation codon codon_start - cons_splice direction + compare cons_splice + direction estimated_length evidence label mod_base number rpt_type rpt_unit + rpt_unit_range tag_peptide transl_except transl_table usedin LOCATION diff --git a/lib/Bio/SeqIO/gbdriver.pm b/lib/Bio/SeqIO/gbdriver.pm index c7f4fa540..b19896721 100644 --- a/lib/Bio/SeqIO/gbdriver.pm +++ b/lib/Bio/SeqIO/gbdriver.pm @@ -165,10 +165,12 @@ use base qw(Bio::SeqIO); my %FTQUAL_NO_QUOTE = map {$_ => 1} qw( anticodon citation codon codon_start - cons_splice direction + compare cons_splice + direction estimated_length evidence label mod_base number rpt_type rpt_unit + rpt_unit_range tag_peptide transl_except transl_table usedin ); diff --git a/lib/Bio/SeqIO/genbank.pm b/lib/Bio/SeqIO/genbank.pm index dc56239eb..9f9926c3a 100644 --- a/lib/Bio/SeqIO/genbank.pm +++ b/lib/Bio/SeqIO/genbank.pm @@ -196,10 +196,12 @@ our $FTQUAL_LINE_LENGTH = 60; our %FTQUAL_NO_QUOTE = map {$_ => 1} qw( anticodon citation codon codon_start - cons_splice direction + compare cons_splice + direction estimated_length evidence label mod_base number rpt_type rpt_unit + rpt_unit_range tag_peptide transl_except transl_table usedin ); -- 2.11.4.GIT