From 8bffd5323284eb33968d7eaa5cbeed4e66dfde74 Mon Sep 17 00:00:00 2001 From: Chris Fields Date: Mon, 12 Aug 2013 16:54:08 -0500 Subject: [PATCH] try a git checkout of the branch instead --- .travis.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.travis.yml b/.travis.yml index d493b5a04..a67af82b1 100644 --- a/.travis.yml +++ b/.travis.yml @@ -9,7 +9,7 @@ perl: env: PERL_CPANM_OPT="--notest --force --skip-satisfied" install: #This should solve problem installing Perl's DB_File & GraphViz - - "sudo apt-get install libdb-dev graphviz libgd2-xpm-dev libxml2-dev samtools 2>&1 | tail -n 4" + - "sudo apt-get install libdb-dev graphviz libgd2-xpm-dev libxml2-dev 2>&1 | tail -n 4" #These are recommended or required Perl libraries: - "cpanm GD 2>&1 | tail -n 1" - "cpanm HTML::TableExtract DBI Data::Stag DB_File 2>&1 | tail -n 1" @@ -24,9 +24,11 @@ install: - "cpanm Bio::DB::Sam | tail -n 1" #for some reason tests and deps aren't skipped here. Will have to look into it more... - "cpanm -f -n Bio::ASN1::EntrezGene | tail -n 1" + #Bio::DB::Sam + - "git clone https://github.com/samtools/samtools; cd samtools; git checkout tags/0.1.18; make; export SAMTOOLS=$( pwd )" + - "cpanm Bio::DB::Sam | tail -n 1" #add git repos here... - "git clone https://github.com/bioperl/Bio-Root.git; export PERL5LIB=$( pwd )/Bio-Root/lib:$PERL5LIB" - - "wget https://github.com/samtools/samtools/archive/0.1.17.tar.gz; tar -zxvf 0.1.17.tar.gz; cd 0.1.17; make; export SAMTOOLS=$( pwd )" #This installs BioPerl itself: - "perl ./Build.PL --accept" -- 2.11.4.GIT