From 4766097230eaf5eb98368560efc928aac941f213 Mon Sep 17 00:00:00 2001 From: "Francisco J. Ossandon" Date: Sun, 31 Aug 2014 23:35:59 -0400 Subject: [PATCH] t/data/dmel_2Lchunk.gb: Updated features locations to use current definitions (http://www.insdc.org/documents/feature_table.html#3.4.3). This is necessary for unflattener tests to keep passing after the next commit. --- t/data/dmel_2Lchunk.gb | 36 ++++++++++++------------------------ 1 file changed, 12 insertions(+), 24 deletions(-) diff --git a/t/data/dmel_2Lchunk.gb b/t/data/dmel_2Lchunk.gb index 84741349d..bfe45266a 100644 --- a/t/data/dmel_2Lchunk.gb +++ b/t/data/dmel_2Lchunk.gb @@ -69,10 +69,8 @@ FEATURES Location/Qualifiers transcript_boundaries:(2L:9,836..21,372[-]) cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl FBgn0002121 (0 ""reduction of virulence"")]" - CDS join(complement(-2781..-2655),complement(-2589..-2481), - complement(-2220..-1778),complement(-1713..-1071), - complement(-479..-374),complement(-316..875), - complement(934..1712),complement(5886..5945)) + CDS complement(join(-2781..-2655,-2589..-2481,-2220..-1778, + -1713..-1071,-479..-374,-316..875,934..1712,5886..5945)) /translation="MLKFIRGKGQQPSADRQRYITAQHGFPHKPSALAYDPVLKLMAI GTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWE PVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIY @@ -120,10 +118,8 @@ FEATURES Location/Qualifiers transcript_boundaries:(2L:9,836..21,372[-]) cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl FBgn0002121 (0 ""reduction of virulence"")]" - CDS join(complement(-2781..-2655),complement(-2589..-2481), - complement(-2220..-1778),complement(-1713..-1071), - complement(-479..-374),complement(-316..875), - complement(934..1649)) + CDS complement(join(-2781..-2655,-2589..-2481,-2220..-1778, + -1713..-1071,-479..-374,-316..875,934..1649)) /translation="MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYG TGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGN IYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC @@ -170,10 +166,8 @@ FEATURES Location/Qualifiers transcript_boundaries:(2L:9,836..21,372[-]) cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl FBgn0002121 (0 ""reduction of virulence"")]" - CDS join(complement(-2781..-2655),complement(-2589..-2481), - complement(-2220..-1778),complement(-1713..-1071), - complement(-479..-374),complement(-316..875), - complement(934..1649)) + CDS complement(join(-2781..-2655,-2589..-2481,-2220..-1778, + -1713..-1071,-479..-374,-316..875,934..1649)) /translation="MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYG TGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGN IYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC @@ -220,10 +214,8 @@ FEATURES Location/Qualifiers transcript_boundaries:(2L:9,836..21,372[-]) cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl FBgn0002121 (0 ""reduction of virulence"")]" - CDS join(complement(-2781..-2655),complement(-2589..-2481), - complement(-2220..-1778),complement(-1713..-1071), - complement(-479..-374),complement(-316..875), - complement(934..1649)) + CDS complement(join(-2781..-2655,-2589..-2481,-2220..-1778, + -1713..-1071,-479..-374,-316..875,934..1649)) /translation="MAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYG TGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGN IYQLDLHTFTIKEPVIYHDVVLEQVPPAYKLNPGAIESIRQLPNSPSKLLVAYNRGLC @@ -270,10 +262,8 @@ FEATURES Location/Qualifiers transcript_boundaries:(2L:9,836..18,583[-]) cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl FBgn0002121 (0 ""reduction of virulence"")]" - CDS join(complement(-2781..-2655),complement(-2589..-2481), - complement(-2220..-1778),complement(-1713..-1071), - complement(-479..-374),complement(-316..875), - complement(934..1712),complement(3054..3137)) + CDS complement(join(-2781..-2655,-2589..-2481,-2220..-1778, + -1713..-1071,-479..-374,-316..875,934..1712,3054..3137)) /translation="MLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYD PVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTA ANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTF @@ -321,10 +311,8 @@ FEATURES Location/Qualifiers transcript_boundaries:(2L:9,836..18,583[-]) cyto:21A2-21A2 gene_info:[CG2671 gene symbol:l(2)gl FBgn0002121 (0 ""reduction of virulence"")]" - CDS join(complement(-2781..-2655),complement(-2589..-2481), - complement(-2220..-1778),complement(-1713..-1071), - complement(-479..-374),complement(-316..875), - complement(934..1712),complement(3054..3137)) + CDS complement(join(-2781..-2655,-2589..-2481,-2220..-1778, + -1713..-1071,-479..-374,-316..875,934..1712,3054..3137)) /translation="MLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYD PVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTA ANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTF -- 2.11.4.GIT