Next round if Ontology and OntologyIO changes and fixes. All tests pass
commita9a6503c6f3a0bb1644c7acdd891d320d7241d23
authorlapp <lapp@bioperl.org>
Tue, 4 Mar 2003 03:00:52 +0000 (4 03:00 -0000)
committerlapp <lapp@bioperl.org>
Tue, 4 Mar 2003 03:00:52 +0000 (4 03:00 -0000)
treef351b6bd32a6bd669f5af28875e041b28b6bee5d
parent55309dc8d8f403d0b9d9dc945f9152e5e8c52f6c
Next round if Ontology and OntologyIO changes and fixes. All tests pass
now, and both the InterPro parser and the GO parser inherited from
OntologyIO.pm. Removed the fancy retrieve-by-name scheme implemented for
Term::ontology and Relationship::ontology because it invited trouble.

svn path=/bioperl-live/trunk/; revision=5680
17 files changed:
Bio/Ontology/GOterm.pm
Bio/Ontology/Ontology.pm
Bio/Ontology/OntologyEngineI.pm
Bio/Ontology/OntologyI.pm
Bio/Ontology/Relationship.pm
Bio/Ontology/RelationshipType.pm
Bio/Ontology/SimpleGOEngine.pm
Bio/Ontology/Term.pm
Bio/OntologyIO/Handlers/InterProHandler.pm
Bio/OntologyIO/InterProParser.pm
Bio/OntologyIO/simpleGOparser.pm
t/GOterm.t
t/InterProParser.t
t/OntologyEngine.t
t/RelationshipType.t
t/Term.t
t/simpleGOparser.t