HMMER: Added support of CS lines in Hmmer2 outputs instead
commita8dd0800eb5954e94ed3a473ccfff475d57b191e
authorFrancisco J. Ossandon <fco.j.ossandon@gmail.com>
Mon, 13 Jan 2014 14:58:23 +0000 (13 11:58 -0300)
committerFrancisco J. Ossandon <fco.j.ossandon@gmail.com>
Mon, 13 Jan 2014 14:58:23 +0000 (13 11:58 -0300)
tree45781339a3d812bdc5cb51ef43c06d8fa7593d32
parent76822a4560a9a3fd0c72faecd53843b0b22683d7
HMMER: Added support of CS lines in Hmmer2 outputs instead
of ignoring them, which can be retrieved using the method
developed for Hmmer3. This method has changed its name from
"consensus_structure "to "consensus_string" to be consistent
with "query_string", "homology_string", etc.
Bio/Search/HSP/GenericHSP.pm
Bio/SearchIO/hmmer2.pm
Bio/SearchIO/hmmer3.pm
t/SearchIO/hmmer.t