Merged release-0-04-bug with the trunk. All test successful. Still need to add back...
commit93bf26d3334a8bd83d2d3be1ee0ae4984f0a7a04
authorsac <sac@bioperl.org>
Sat, 27 Feb 1999 12:28:15 +0000 (27 12:28 -0000)
committersac <sac@bioperl.org>
Sat, 27 Feb 1999 12:28:15 +0000 (27 12:28 -0000)
tree6bb3e01c653d4d9b8c32f47631d19c7b27427c35
parent2990c98c3843b293a8477c75df08237350a5a9cf
Merged release-0-04-bug with the trunk. All test successful. Still need to add back Sigcleave files.

svn path=/bioperl-live/trunk/; revision=906
55 files changed:
Bio/Index/Abstract.pm
Bio/Root/Err.pm
Bio/Root/Global.pm
Bio/Root/IOManager.pm
Bio/Root/Object.pm
Bio/Root/Utilities.pm
Bio/Seq.pm
Bio/SimpleAlign.pm
Bio/Tools/Blast.pm
Bio/Tools/Blast/CHANGES
Bio/Tools/Blast/HSP.pm
Bio/Tools/Blast/HTML.pm
Bio/Tools/Blast/Run/Webblast.pm
Bio/Tools/Blast/Run/postclient.pl
Bio/Tools/Blast/Sbjct.pm
Bio/Tools/Fasta.pm
Bio/Tools/Sigcleave.pm [deleted file]
Bio/Tools/WWW.pm
Bio/Tools/pSW.pm
Bio/UnivAln.pm
Changes
Makefile.PL
PLATFORMS
README
bioperl.pod
examples/blast/blast_config.pl
examples/blast/blast_seq.pl
examples/blast/html.pl
examples/blast/out/blastx.208.gz [new file with mode: 0644]
examples/blast/out/tblastn.206.out.gz [moved from examples/blast/out/tblastn_206.out.gz with 98% similarity]
examples/blast/parse.pl
examples/blast/parse2.pl
examples/blast/parse_multi.pl
examples/blast/parse_positions.pl
examples/blast/parse_stream.pl
examples/blast/run.pl
examples/blast/seq/acc1.dna.fasta [new file with mode: 0644]
examples/psw.pl
examples/rev_and_trans.pl
examples/root_object/destroy.pl
examples/root_object/filehandle.pl
examples/root_object/read.pl
examples/root_object/utilities.pl
examples/seq/seqs1.pl
examples/seq/seqs2.pl
examples/seq/seqs3.pl
examples/seq/seqs4.pl
examples/seq/seqtools.pl
examples/seq_pattern.pl
examples/simplealign.pl
t/Fasta.t
t/Sigcleave.t [deleted file]
t/SimpleAlign.t
t/seqs.fas [new file with mode: 0644]
t/test.mase [new file with mode: 0644]