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Bio::Map extended to model transcription factors and their binding sites
commit5eee5139e4fe2aff56c1833437b8a8e75f36e9bb
authorsendu <sendu@bioperl.org>
Mon, 15 Dec 2008 17:49:18 +0000 (15 17:49 -0000)
committersendu <sendu@bioperl.org>
Mon, 15 Dec 2008 17:49:18 +0000 (15 17:49 -0000)
treeb70616a0254051a12ba786a9890353d18aaf4b38tree | snapshot (tar.gz zip)
parent3641bbd2f6ed53561edcd7dd732f4f38bc9c00a7commit | diff
Bio::Map extended to model transcription factors and their binding sites

svn path=/bioperl-live/trunk/; revision=15159
83 files changed:
Bio/Map/Gene.pm [new file with mode: 0755] blob
Bio/Map/GeneMap.pm [new file with mode: 0755] blob
Bio/Map/GenePosition.pm [new file with mode: 0755] blob
Bio/Map/GeneRelative.pm [new file with mode: 0755] blob
Bio/Map/PositionWithSequence.pm [new file with mode: 0644] blob
Bio/Map/Prediction.pm [new file with mode: 0644] blob
Bio/Map/TranscriptionFactor.pm [new file with mode: 0644] blob
t/Map/Map.t diff | blob | blame | history
t/data/map_hem/HEM1-HEM12.fa [new file with mode: 0644] blob
t/data/map_hem/HEM1-HEM12.fa.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM1-HEM12.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM1-HEM13.fa [new file with mode: 0644] blob
t/data/map_hem/HEM1-HEM13.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM1-HEM14.fa [new file with mode: 0644] blob
t/data/map_hem/HEM1-HEM14.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM1-HEM15.fa [new file with mode: 0644] blob
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t/data/map_hem/HEM1-HEM4.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM1.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM1.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM12-HEM13.fa [new file with mode: 0644] blob
t/data/map_hem/HEM12-HEM13.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM12-HEM14.fa [new file with mode: 0644] blob
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t/data/map_hem/HEM12-HEM15.fa [new file with mode: 0644] blob
t/data/map_hem/HEM12-HEM15.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM12.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM12.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM13-HEM14.fa [new file with mode: 0644] blob
t/data/map_hem/HEM13-HEM14.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM13-HEM15.fa [new file with mode: 0644] blob
t/data/map_hem/HEM13-HEM15.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM13.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM13.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM14-HEM15.fa [new file with mode: 0644] blob
t/data/map_hem/HEM14-HEM15.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM14.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM14.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM15.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM15.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM12.fa [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM12.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM13.fa [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM13.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM14.fa [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM14.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM15.fa [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM15.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM3.fa [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM3.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM4.fa [new file with mode: 0644] blob
t/data/map_hem/HEM2-HEM4.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM2.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM2.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM12.fa [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM12.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM13.fa [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM13.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM14.fa [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM14.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM15.fa [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM15.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM4.fa [new file with mode: 0644] blob
t/data/map_hem/HEM3-HEM4.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM3.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM3.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM12.fa [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM12.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM13.fa [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM13.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM14.fa [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM14.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM15.fa [new file with mode: 0644] blob
t/data/map_hem/HEM4-HEM15.meme.txt [new file with mode: 0644] blob
t/data/map_hem/HEM4.ups.fa_ [new file with mode: 0644] blob
t/data/map_hem/HEM4.ups.fa_.revcom [new file with mode: 0644] blob
t/data/map_hem/yeast.nc.1.freq [new file with mode: 0644] blob
BioPerl core