| commit | 443d3990d43558d27870591b94dd737410aa171f | |
| author | Francisco J. Ossandon <fco.j.ossandon@gmail.com> | |
| Fri, 27 Jun 2014 19:37:07 +0000 (27 15:37 -0400) | ||
| committer | Francisco J. Ossandon <fco.j.ossandon@gmail.com> | |
| Fri, 27 Jun 2014 19:37:07 +0000 (27 15:37 -0400) | ||
| tree | 215f51e0c84cf20635c3023877bd38cc20bc5156 | treesnapshot (tar.gz zip) |
| parent | dfb457ab5cb1ec1021749117cac347fb64bdf53d | commitdiff |
genbank.pm: in "_read_GenBank_Species", adjusted a regex to
not match 'str.' or 'var.' when deciding if the line belonged
to CLASSIFICATION instead of ORGANISM. This happened with NC_021815,
and 2 other plasmids because unusually long descriptions:
ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium var. 5-
str. CFSAN001921
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Salmonella.
not match 'str.' or 'var.' when deciding if the line belonged
to CLASSIFICATION instead of ORGANISM. This happened with NC_021815,
and 2 other plasmids because unusually long descriptions:
ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium var. 5-
str. CFSAN001921
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Salmonella.
| Bio/SeqIO/genbank.pm | diffblobblamehistory |