fix deprecated usage warnings for perl 5.16
[bioperl-live.git] / t / data / knownGene.gff3
blobd3c5f4db814013850ab4db3365812dfd5dd8179b
1 ##gff-version 3
2 chr17   UCSC    mRNA    62467934        62469545        .       -       .       ID=A00469;Dbxref=AFFX-U133:205840_x_at,Locuslink:2688,Genbank-mRNA:A00469,Swissprot:P01241,PFAM:PF00103,AFFX-U95:1332_f_at,Swissprot:SOMA_HUMAN;Note=growth%20hormone%201;Alias=GH1
3 chr17   UCSC    three_prime_UTR 62467934        62468038        .       -       .       Parent=A00469
4 chr17   UCSC    CDS     62468039        62468236        .       -       1       Parent=A00469
5 chr17   UCSC    CDS     62468490        62468654        .       -       2       Parent=A00469
6 chr17   UCSC    CDS     62468747        62468866        .       -       1       Parent=A00469
7 chr17   UCSC    CDS     62469076        62469236        .       -       1       Parent=A00469
8 chr17   UCSC    CDS     62469497        62469506        .       -       0       Parent=A00469
9 chr17   UCSC    five_prime_UTR  62469507        62469545        .       -       .       Parent=A00469
10 chr9    UCSC    mRNA    90517946        90527968        .       -       .       ID=AB000114;Ontology_term=GO:0007155,GO:0005194;Ontology_term=GO:0005578;Dbxref=AFFX-U95:41031_at,Genbank-protein:BAA19055,Unigene:Hs.94070,AFFX-U133:205907_s_at,Genbank-mRNA:AB000114,Locuslink:4958,Swissprot:Q99983,Swissprot:OMD_HUMAN,Refseq-mRNA:NM_005014,Refseq-protein:NP_005005,PFAM:PF01462,PFAM:00560;Note=osteomodulin;Alias=OMD;
11 #.      UCSC    protein .       .       .       .       .       ID=BAA19055;Parent=AB000114
12 chr9    UCSC    three_prime_UTR 90517946        90518841        .       -       .       Parent=AB000114
13 chr9    UCSC    CDS     90518842        90519167        .       -       1       Parent=AB000114
14 chr9    UCSC    CDS     90520309        90521248        .       -       0       Parent=AB000114
15 chr9    UCSC    five_prime_UTR  90521249        90521264        .       -       .       Parent=AB000114
16 chr9    UCSC    five_prime_UTR  90527892        90527968        .       -       .       Parent=AB000114
17 chr9    BLASTN  match   90518850        90521248        0.0     +       .       ID=blastresult.1;Target=BC046356.1%20space%20test 178 1828;Gap=M78 I759 M1561