1 <nex:nexml generator="Bio::Phylo::Project v.0.17_RC9_841" version="0.8" xmlns="http://www.nexml.org/1.0" xmlns:nex="http://www.nexml.org/1.0" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/1.0 http://www.nexml.org/1.0/nexml.xsd">
2 <otus id="otus1" xmlns:cdao="http://www.evolutionaryontology.org/cdao/1.0/cdao.owl">
3 <otu id="otu2" label="S. amia"/>
4 <otu id="otu3" label="S. cordyla"/>
5 <otu id="otu4" label="S. pelagicus"/>
6 <otu id="otu5" label="S. glaucus" typeof="cdao:TU" property="cdao:has_Taxonomy_Reference" resource="http://www.zoobank.org/?urn:lsid:zoobank.org:act:2CD1E27B-D572-447C-BD0F-2AA998447FBF" />
7 <otu id="otu6" label="S. scombrus"/> <!-- the Atlantic mackerel, Scomber scombrus -->
8 <otu id="otu7" label="S. thynnus"/>
10 <trees id="trees16" otus="otus1">
11 <tree id="tree18" label="'the tree'" xsi:type="nex:IntTree">
12 <node id="node19" root="true"/>
13 <node id="node20" label="S. amia" otu="otu2"/>
18 <node id="node26" label="S. glaucus" otu="otu5"/>
19 <node id="node28" label="S. scombrus" otu="otu6"/>
20 <node id="node29" label="S. thynnus" otu="otu7"/>
21 <node id="node24" label="S. cordyla" otu="otu3"/>
22 <node id="node25" label="S. pelagicus" otu="otu4"/>
23 <edge id="edge20" length="4" source="node19" target="node20"/>
24 <edge id="edge21" length="1" source="node19" target="node21"/>
25 <edge id="edge22" length="1" source="node21" target="node22"/>
26 <edge id="edge27" length="2" source="node21" target="node27"/>
27 <edge id="edge23" length="1" source="node22" target="node23"/>
28 <edge id="edge26" length="2" source="node22" target="node26"/>
29 <edge id="edge28" length="1" source="node27" target="node28"/>
30 <edge id="edge29" length="1" source="node27" target="node29"/>
31 <edge id="edge24" length="1" source="node23" target="node24"/>
32 <edge id="edge25" length="1" source="node23" target="node25"/>
35 <characters id="characters8" otus="otus1" xsi:type="nex:StandardCells">
37 <states id="states10">
38 <state id="s1" symbol="0"/>
39 <state id="s2" symbol="1"/>
40 <state id="s3" symbol="2"/>
41 <state id="s4" symbol="3"/>
42 <state id="s5" symbol="4"/>
43 <state id="s6" symbol="5"/>
44 <state id="s7" symbol="6"/>
45 <state id="s8" symbol="7"/>
46 <state id="s9" symbol="8"/>
47 <state id="s10" symbol="9"/>
48 <uncertain_state_set id="s11" symbol="-"></uncertain_state_set>
49 <uncertain_state_set id="s12" symbol="?">
61 </uncertain_state_set>
63 <char id="c1" states="states10"/>
66 <row id="row9" label="S. amia" otu="otu2">
67 <cell char="c1" state="s1"/>
69 <row id="row11" label="S. cordyla" otu="otu3">
70 <cell char="c1" state="s3"/>
72 <row id="row12" label="S. pelagicus" otu="otu4">
73 <cell char="c1" state="s3"/>
75 <row id="row13" label="S. glaucus" otu="otu5">
76 <cell char="c1" state="s1"/>
78 <row id="row14" label="S. scombrus" otu="otu6">
79 <cell char="c1" state="s2"/>
81 <row id="row15" label="S. thynnus" otu="otu7">
82 <cell char="c1" state="s1"/>