Bio/Factory/MapFactoryI.pm

   1 #
   2 # BioPerl module for Bio::Factory::MapFactoryI
   3 #
   4 # Please direct questions and support issues to <bioperl-l@bioperl.org>
   5 #
   6 # Cared for by Jason Stajich <jason@bioperl.org>
   7 #
   8 # Copyright Jason Stajich
   9 #
  10 # You may distribute this module under the same terms as perl itself
  11
  12 # POD documentation - main docs before the code
  13
  14 =head1 NAME
  15
  16 Bio::Factory::MapFactoryI - A Factory for getting markers
  17
  18 =head1 SYNOPSIS
  19
  20     # get a Map Factory somehow likely from Bio::MapIO system
  21
  22     while( my $map = $mapin->next_map ) {
  23         print "map name is ", $map->name, " length is ",
  24             $map->length, " ", $map->units, "\n";
  25         $mapout->write_map($map);
  26     }
  27
  28 =head1 DESCRIPTION
  29
  30 This interface describes the necessary minimum methods for getting
  31 Maps from a data stream.  It also supports writing Map data back to a
  32 stream.
  33
  34 =head1 FEEDBACK
  35
  36 =head2 Mailing Lists
  37
  38 User feedback is an integral part of the evolution of this and other
  39 Bioperl modules. Send your comments and suggestions preferably to
  40 the Bioperl mailing list.  Your participation is much appreciated.
  41
  42   bioperl-l@bioperl.org                  - General discussion
  43   http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
  44
  45 =head2 Support
  46
  47 Please direct usage questions or support issues to the mailing list:
  48
  49 I<bioperl-l@bioperl.org>
  50
  51 rather than to the module maintainer directly. Many experienced and
  52 reponsive experts will be able look at the problem and quickly
  53 address it. Please include a thorough description of the problem
  54 with code and data examples if at all possible.
  55
  56 =head2 Reporting Bugs
  57
  58 Report bugs to the Bioperl bug tracking system to help us keep track
  59 of the bugs and their resolution. Bug reports can be submitted via the
  60 web:
  61
  62   https://github.com/bioperl/bioperl-live/issues
  63
  64 =head1 AUTHOR - Jason Stajich
  65
  66 Email jason@bioperl.org
  67
  68 =head1 APPENDIX
  69
  70 The rest of the documentation details each of the object methods.
  71 Internal methods are usually preceded with a _
  72
  73 =cut
  74
  75
  76 # Let the code begin...
  77
  78
  79 package Bio::Factory::MapFactoryI;
  80 use strict;
  81
  82 use base qw(Bio::Root::RootI);
  83
  84 =head2 next_map
  85
  86  Title   : next_map
  87  Usage   : my $map = $factory->next_map;
  88  Function: Get a map from the factory
  89  Returns : L<Bio::Map::MapI>
  90  Args    : none
  91
  92 =cut
  93
  94 sub next_map{
  95    my ($self,@args) = @_;
  96    $self->throw_not_implemented();
  97 }
  98
  99 =head2 write_map
 100
 101  Title   : write_map
 102  Usage   : $factory->write_map($map);
 103  Function: Write a map out through the factory
 104  Returns : none
 105  Args    : L<Bio::Map::MapI>
 106
 107 =cut
 108
 109 sub write_map{
 110    my ($self,@args) = @_;
 111    $self->throw_not_implemented();
 112 }
 113
 114 1;