fsck: verify commit graph when implicitly enabled

fsck: verify commit graph when implicitly enabled

Change fsck to check the "core_commit_graph" variable set in
"repo-settings.c" instead of reading the "core.commitGraph" variable.
This fixes a bug where we wouldn't verify the commit-graph if the
config key was missing. This bug was introduced in
31b1de6a09 (commit-graph: turn on commit-graph by default, 2019-08-13),
where core.commitGraph was turned on by default.

Add tests to "t5318-commit-graph.sh" to verify that fsck checks the
commit-graph as expected for the 3 values of core.commitGraph. Also,
disable GIT_TEST_COMMIT_GRAPH in t/t0410-partial-clone.sh because some
test cases use fsck in ways that assume that commit-graph checking is
disabled.

Helped-by: Ævar Arnfjörð Bjarmason <avarab@gmail.com>
Signed-off-by: Glen Choo <chooglen@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>