2024-04-26 |
Tao Liu | update docs
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | update docs
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | update
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | add more format related files
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | reorg md files
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | update docs
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | #637 -O3 replaces -Ofast
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | fix a missing url
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | cutoff-analysis-steps option for bdgpeakcall and hmmratac
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | add cutoff-analysis-steps to hmmratac
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | update hmmratac
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | update instructions for conda install
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | output the correct number of candidate regions before...
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | suppress debug info
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | correct chromosome name output in states.bed file
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | update standard output from hmmratac since prev results...
|
commit | commitdiff | tree |
2024-04-26 |
Tao Liu | use a single tempfile to save/load the temporary data...
|
commit | commitdiff | tree |
2024-04-25 |
Tao Liu | fix bug at chromosome start
|
commit | commitdiff | tree |
2024-04-25 |
Tao Liu | fix bug while generating/saving stat path
|
commit | commitdiff | tree |
2024-04-25 |
Tao Liu | fix bug while generating/saving stat path
|
commit | commitdiff | tree |
2024-03-08 |
Tao Liu | put back debian badges
|
commit | commitdiff | tree |
2024-03-02 |
Tao Liu | change step name and add comment
|
commit | commitdiff | tree |
2024-03-02 |
Tao Liu | use trusted publishing to upload package to pypi
|
commit | commitdiff | tree |
2024-03-02 |
Tao Liu | update versions of dependencies
|
commit | commitdiff | tree |
2024-03-02 |
Tao Liu | skip hmm unittest for now
|
commit | commitdiff | tree |
2024-03-02 |
Tao Liu | with hmmlearn0.3.2
|
commit | commitdiff | tree |
2024-02-24 |
Tao Liu | fix macosx ga
|
commit | commitdiff | tree |
2024-02-24 |
Tao Liu | we need to fix the required hmmlearn version to 0.3...
|
commit | commitdiff | tree |
2024-02-24 |
Tao Liu | explicitly use `python3` and `python3 -m`
|
commit | commitdiff | tree |
2024-02-23 |
Tao Liu | update conda badge
|
commit | commitdiff | tree |
2024-02-23 |
Tao Liu | after conda build, add pytest through conda
|
commit | commitdiff | tree |
2024-02-22 |
Tao Liu | for conda build, no test
|
commit | commitdiff | tree |
2024-02-22 |
Tao Liu | for conda build, only do pytest
|
commit | commitdiff | tree |
2024-02-22 |
Tao Liu | for conda build, add zlib
|
commit | commitdiff | tree |
2024-02-22 |
Tao Liu | for conda build, add Cython to host section
|
commit | commitdiff | tree |
2024-02-21 |
Tao Liu | update docs
|
commit | commitdiff | tree |
2024-02-21 |
Tao Liu | update docs 3.0.1
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | turn on testing for python3.9-3.12
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | after patching hmmlearn, we change back the requirements...
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | after patching hmmlearn, test scikit-learn 1.4.1, numpy...
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | after patching hmmlearn, test scikit-learn 1.3.2, numpy...
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | after patching hmmlearn, test scikit-learn 1.2.1, numpy...
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | patch the hmmlearn.GaussianHMM class according to PR...
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | try scikit-learn 1.3.2, numpy 1.24.2, scipy 1.11.4
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | try scikit-learn 1.2.1, numpy 1.24.2, scipy 1.11.4
|
commit | commitdiff | tree |
2024-02-18 |
Tao Liu | try scikit-learn 1.3.2, numpy 1.26, scipy 1.11.4
|
commit | commitdiff | tree |
2024-02-17 |
Tao Liu | only test python3.11 since python3.12 removes distutil
|
commit | commitdiff | tree |
2024-02-17 |
Tao Liu | use specs in debian testing system from #615
|
commit | commitdiff | tree |
2024-02-17 |
Tao Liu | add some comment in test_HMMR_HMM
|
commit | commitdiff | tree |
2024-02-17 |
Tao Liu | unit test for hmm_predict
|
commit | commitdiff | tree |
2024-02-17 |
philippadoherty | init updated hmm unittest
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | make testing for armv7/ppc64le/s390x on-demmand in...
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | adjust the triggers for publish-to-* actions
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | update documentations
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | turn back on non-x86 test for hmmratac results
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | let require scikit-learn >=1.2.
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | return to pip default behavior to see if the results...
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | return to pip default behavior to see if the results...
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | apt install pkg-config
|
commit | commitdiff | tree |
2024-02-16 |
Tao Liu | apt install libopenblas-dev
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | apt install cmake
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | add scipy as dependency -- hmmlearn needs it, so that...
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | fix cmdlinetest-nohmmratac script
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | fix version of upload-pages-artifact action
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | fix version of upload-pages-artifact action
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | update md
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | update github actions;fix macosx tests to use different...
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | correct hmmratc commandlines in cmdlinetest-nohmmratac
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | fix build-test-website action
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | add tests for python3.12; update INSTALL.md
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | correct the numbering of testing steps in cmdlinetest
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | correct archive filenames
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | we will run hmmratac on non-x86 but not check the results...
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | add ninja/meson to non-x64 tests. upgrade versions...
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | let numpy>=1.24
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | do not archive testing results
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | mac os13 only
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | 3.10 -> "3.10"
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | upgrade OS for testing
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | upgrade OS for testing
|
commit | commitdiff | tree |
2024-02-15 |
Tao Liu | output more information while comparing outputs
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | try again, archive testing results
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | try again, archive testing results
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | try again, archive testing results
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | archive cmdlinetest results;enable rw
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | archive cmdlinetest results
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | archive cmdlinetest results
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | install bc for non-x86 test
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | let's test hmmratac non-x86
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | --no-build-isolation
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | copy over README.md to sphinx root as index.md
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | clean up setup.py script removing some old 'requirements'
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | add sphinx rtd theme
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | update pyproject
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | limit scikit-learn version so numpy won't be upgraded...
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | retry
|
commit | commitdiff | tree |
2024-02-14 |
Tao Liu | retry
|
commit | commitdiff | tree |
2024-02-13 |
Tao Liu | update build-and-test website workflow with Sphinx
|
commit | commitdiff | tree |
2024-02-13 |
Tao Liu | update docs to work with Sphinx
|
commit | commitdiff | tree |
2024-02-12 |
Tao Liu | fix a bug in jaccard.py; update ChangeLog
|
commit | commitdiff | tree |