| 2024-04-26 |
Tao Liu | #637 -O3 replaces -Ofast
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| 2024-04-26 |
Tao Liu | fix a missing url
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| 2024-04-26 |
Tao Liu | cutoff-analysis-steps option for bdgpeakcall and hmmratac
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| 2024-04-26 |
Tao Liu | add cutoff-analysis-steps to hmmratac
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| 2024-04-26 |
Tao Liu | update hmmratac
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| 2024-04-26 |
Tao Liu | update instructions for conda install
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| 2024-04-26 |
Tao Liu (τν) | Merge pull request #640 from macs3-project/feat/macs3...
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| 2024-04-26 |
Tao Liu | output the correct number of candidate regions before...
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| 2024-04-26 |
Tao Liu | suppress debug info
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| 2024-04-26 |
Tao Liu | correct chromosome name output in states.bed file
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| 2024-04-26 |
Tao Liu | update standard output from hmmratac since prev results...
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| 2024-04-26 |
Tao Liu | use a single tempfile to save/load the temporary data...
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| 2024-04-25 |
Tao Liu | fix bug at chromosome start
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| 2024-04-25 |
Tao Liu | fix bug while generating/saving stat path
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| 2024-04-25 |
Tao Liu | fix bug while generating/saving stat path
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| 2024-03-28 |
Tao Liu (τν) | Merge pull request #635 from macs3-project/feat/macs3...
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| 2024-03-08 |
Tao Liu | put back debian badges
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| 2024-03-05 |
Tao Liu (τν) | Merge pull request #631 from macs3-project/feat/macs3...
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| 2024-03-02 |
Tao Liu (τν) | Merge pull request #632 from macs3-project/feat/macs3...
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| 2024-03-02 |
Tao Liu (τν) | Update publish-to-pypi.yml
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| 2024-03-02 |
Tao Liu (τν) | Update publish-to-pypi.yml
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| 2024-03-02 |
Tao Liu (τν) | Update publish-to-pypi.yml
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| 2024-03-02 |
Tao Liu | change step name and add comment
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| 2024-03-02 |
Tao Liu | use trusted publishing to upload package to pypi
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| 2024-03-02 |
Tao Liu | update versions of dependencies
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| 2024-03-02 |
Tao Liu | skip hmm unittest for now
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| 2024-03-02 |
Tao Liu | with hmmlearn0.3.2
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| 2024-02-29 |
Tao Liu (τν) | Merge pull request #630 from bgruening/master
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| 2024-02-28 |
Tao Liu (τν) | Merge pull request #629 from mr-c/spelliing
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| 2024-02-27 |
Tao Liu (τν) | Merge pull request #627 from macs3-project/feat/macs3...
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| 2024-02-24 |
Tao Liu (τν) | Update README.md -- update badge
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| 2024-02-24 |
Tao Liu (τν) | Merge pull request #625 from macs3-project/feat/macs3...
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| 2024-02-24 |
Tao Liu | fix macosx ga
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| 2024-02-24 |
Tao Liu | we need to fix the required hmmlearn version to 0.3...
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| 2024-02-24 |
Tao Liu | explicitly use `python3` and `python3 -m`
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| 2024-02-24 |
Tao Liu (τν) | Merge pull request #624 from mr-c/invalid_escape_sequence
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| 2024-02-23 |
Tao Liu (τν) | Merge pull request #623 from mr-c/python3
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| 2024-02-23 |
Tao Liu (τν) | Merge pull request #622 from macs3-project/release...
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| 2024-02-23 |
Tao Liu | update conda badge
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| 2024-02-23 |
Tao Liu | after conda build, add pytest through conda
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| 2024-02-22 |
Tao Liu | for conda build, no test
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| 2024-02-22 |
Tao Liu | for conda build, only do pytest
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| 2024-02-22 |
Tao Liu | for conda build, add zlib
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| 2024-02-22 |
Tao Liu | for conda build, add Cython to host section
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| 2024-02-21 |
Tao Liu | update docs
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| 2024-02-21 |
Tao Liu | update docs 3.0.1
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| 2024-02-20 |
Tao Liu (τν) | Merge pull request #620 from macs3-project/misc/macs3...
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| 2024-02-18 |
Tao Liu | turn on testing for python3.9-3.12
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| 2024-02-18 |
Tao Liu | after patching hmmlearn, we change back the requirements...
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| 2024-02-18 |
Tao Liu | after patching hmmlearn, test scikit-learn 1.4.1, numpy...
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| 2024-02-18 |
Tao Liu | after patching hmmlearn, test scikit-learn 1.3.2, numpy...
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| 2024-02-18 |
Tao Liu | after patching hmmlearn, test scikit-learn 1.2.1, numpy...
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| 2024-02-18 |
Tao Liu | patch the hmmlearn.GaussianHMM class according to PR...
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| 2024-02-18 |
Tao Liu | try scikit-learn 1.3.2, numpy 1.24.2, scipy 1.11.4
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| 2024-02-18 |
Tao Liu | try scikit-learn 1.2.1, numpy 1.24.2, scipy 1.11.4
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| 2024-02-18 |
Tao Liu | try scikit-learn 1.3.2, numpy 1.26, scipy 1.11.4
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| 2024-02-17 |
Tao Liu | only test python3.11 since python3.12 removes distutil
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| 2024-02-17 |
Tao Liu | use specs in debian testing system from #615
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| 2024-02-17 |
Tao Liu | add some comment in test_HMMR_HMM
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| 2024-02-17 |
Tao Liu | unit test for hmm_predict
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| 2024-02-16 |
Tao Liu (τν) | Merge pull request #619 from macs3-project/feat/macs3...
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| 2024-02-16 |
Tao Liu | make testing for armv7/ppc64le/s390x on-demmand in...
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| 2024-02-16 |
Tao Liu | adjust the triggers for publish-to-* actions
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| 2024-02-16 |
Tao Liu | update documentations
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| 2024-02-16 |
Tao Liu | turn back on non-x86 test for hmmratac results
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| 2024-02-16 |
Tao Liu (τν) | Merge branch 'master' into feat/macs3/test_peak_overlap
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| 2024-02-16 |
Tao Liu | let require scikit-learn >=1.2.
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| 2024-02-16 |
Tao Liu | return to pip default behavior to see if the results...
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| 2024-02-16 |
Tao Liu | return to pip default behavior to see if the results...
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| 2024-02-16 |
Tao Liu | apt install pkg-config
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| 2024-02-16 |
Tao Liu | apt install libopenblas-dev
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| 2024-02-15 |
Tao Liu | apt install cmake
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| 2024-02-15 |
Tao Liu | add scipy as dependency -- hmmlearn needs it, so that...
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| 2024-02-15 |
Tao Liu | fix cmdlinetest-nohmmratac script
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| 2024-02-15 |
Tao Liu | fix version of upload-pages-artifact action
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| 2024-02-15 |
Tao Liu | fix version of upload-pages-artifact action
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| 2024-02-15 |
Tao Liu | update md
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| 2024-02-15 |
Tao Liu | update github actions;fix macosx tests to use different...
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| 2024-02-15 |
Tao Liu | correct hmmratc commandlines in cmdlinetest-nohmmratac
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| 2024-02-15 |
Tao Liu | fix build-test-website action
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| 2024-02-15 |
Tao Liu | add tests for python3.12; update INSTALL.md
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| 2024-02-15 |
Tao Liu | correct the numbering of testing steps in cmdlinetest
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| 2024-02-15 |
Tao Liu | correct archive filenames
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| 2024-02-15 |
Tao Liu | we will run hmmratac on non-x86 but not check the results...
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| 2024-02-15 |
Tao Liu | add ninja/meson to non-x64 tests. upgrade versions...
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| 2024-02-15 |
Tao Liu | let numpy>=1.24
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| 2024-02-15 |
Tao Liu | do not archive testing results
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| 2024-02-15 |
Tao Liu | mac os13 only
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| 2024-02-15 |
Tao Liu | 3.10 -> "3.10"
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| 2024-02-15 |
Tao Liu | upgrade OS for testing
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| 2024-02-15 |
Tao Liu | upgrade OS for testing
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| 2024-02-15 |
Tao Liu | output more information while comparing outputs
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| 2024-02-14 |
Tao Liu | try again, archive testing results
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| 2024-02-14 |
Tao Liu | try again, archive testing results
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| 2024-02-14 |
Tao Liu | try again, archive testing results
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| 2024-02-14 |
Tao Liu | archive cmdlinetest results;enable rw
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| 2024-02-14 |
Tao Liu | archive cmdlinetest results
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| 2024-02-14 |
Tao Liu | archive cmdlinetest results
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| 2024-02-14 |
Tao Liu | install bc for non-x86 test
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| 2024-02-14 |
Tao Liu | let's test hmmratac non-x86
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