From c39e5b08f81bf1bb73ef1d1ae7d3fa7f88691957 Mon Sep 17 00:00:00 2001
From: Yuuki Galaxy <galaxy001@gmail.com>
Date: Tue, 3 Aug 2021 15:08:07 +0800
Subject: [PATCH] 	modified:   tasks/common.wdl

---
 etc/gatk-wdl/fm2artix/ReadMe.md        | 1 +
 etc/gatk-wdl/fm2artix/tasks/common.wdl | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/etc/gatk-wdl/fm2artix/ReadMe.md b/etc/gatk-wdl/fm2artix/ReadMe.md
index 23efa85df..9722aaabe 100644
--- a/etc/gatk-wdl/fm2artix/ReadMe.md
+++ b/etc/gatk-wdl/fm2artix/ReadMe.md
@@ -24,6 +24,7 @@ cromwell submit -i fmtest.json fm2.wdl -o cromwell_options_no_user.json -p fm2wd
 ```bash
 pacman -S python-yaml
 expac --timefmt='%F %T' '%l %n' | sort -n > expac.lst
+yay -S jre11-openjdk imagej
 pacman -S adobe-source-han-sans-otc-fonts adobe-source-han-serif-otc-fonts
 ```
 
diff --git a/etc/gatk-wdl/fm2artix/tasks/common.wdl b/etc/gatk-wdl/fm2artix/tasks/common.wdl
index 77f160f68..ac897d779 100644
--- a/etc/gatk-wdl/fm2artix/tasks/common.wdl
+++ b/etc/gatk-wdl/fm2artix/tasks/common.wdl
@@ -227,7 +227,7 @@ task YamlToJson {
 	command {
 		set -e
 		mkdir -p "$(dirname ~{outputJson})"
-		python <<CODE
+		python3 <<CODE
 		import json
 		import yaml
 		with open("~{yaml}", "r") as input_yaml:
-- 
2.11.4.GIT