From 4dff529b755997a1ea20a21bd44f36d20ea6bc8e Mon Sep 17 00:00:00 2001
From: Yuuki Galaxy <galaxy001@gmail.com>
Date: Thu, 18 Mar 2021 16:05:08 +0800
Subject: [PATCH] 	modified:   tasks/fgi.wdl

---
 etc/gatk-wdl/fm2/tasks/fgi.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/etc/gatk-wdl/fm2/tasks/fgi.wdl b/etc/gatk-wdl/fm2/tasks/fgi.wdl
index d160e2779..7c017f4ab 100644
--- a/etc/gatk-wdl/fm2/tasks/fgi.wdl
+++ b/etc/gatk-wdl/fm2/tasks/fgi.wdl
@@ -25,7 +25,7 @@ task FilterSamReads {
 		'    var ce = cigar.getCigarElement(i);',
 		'    if (ce.getOperator().name() == "M") readMatch += ce.length;',
 		'  }',
-		'  if (readMatch > 200) return true;',
+		'  if (readMatch > 50) return true;',
 		'}',
 		'accept(record);'
 	]
-- 
2.11.4.GIT