lispstat.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2009-03-11 20:06:32 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       lispstat.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 (in-package :cl-user)
  15
  16 (defpackage :lisp-stat-config
  17   (:use :common-lisp)
  18   (:export *default-path*
  19            *lsos-files* *basic-files* *ls-files*
  20            *lispstat-home-dir*
  21            *lispstat-data-dir* *lispstat-examples-dir*))
  22
  23 (in-package :lisp-stat-config)
  24
  25 (defparameter *lispstat-home-dir*
  26   (directory-namestring
  27    (truename (asdf:system-definition-pathname :lispstat)))
  28   "Value considered \"home\" for our data")
  29
  30 #|
  31   (setf *lispstat-home-dir*
  32       (directory-namestring (truename (asdf:system-definition-pathname
  33                                        :lispstat))))
  34 |#
  35
  36 (macrolet ((ls-dir (root-str)
  37              `(pathname (concatenate 'string
  38                                      (namestring *lispstat-home-dir*) ,root-str)))
  39
  40            (ls-defdir (target-dir-var  root-str)
  41              `(defvar ,target-dir-var (ls-dir ,root-str))))
  42
  43   ;; reminder of testing
  44   ;;(macroexpand '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  45   ;;(macroexpand-1 '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  46   ;;(macroexpand-1 '(ls-dir "ASDF"))
  47
  48   (ls-defdir *lispstat-asdf-dir* "ASDF/")
  49   (ls-defdir *lispstat-data-dir* "Data/")
  50   (ls-defdir *lispstat-external-dir* "external/")
  51 )
  52
  53 ;;(pushnew *lispstat-asdf-dir* asdf:*central-registry*)
  54
  55
  56 ;; (pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  57
  58 ;;; back to our regularly scheduled work...
  59 ;;; We should not need these, I think, but?
  60 ;; (asdf:oos 'asdf:compile-op :cffi)            ;; FFI
  61 ;; (asdf:oos 'asdf:compile-op :lift)            ;; Unit Testing
  62 ;; (asdf:oos 'asdf:load-op :cffi)            ;; FFI
  63 ;; (asdf:oos 'asdf:load-op :lift)            ;; Unit Testing
  64
  65 ;;; MAJOR HACK, FIXME!
  66 ;;(load "/media/disk/Desktop/sandbox/matlisp.git/start.lisp")
  67
  68 (in-package :cl-user)
  69
  70 (defpackage #:lispstat-system
  71     (:use :common-lisp :asdf))
  72
  73 (in-package #:lispstat-system)
  74
  75 ;;; To avoid renaming everything from *.lsp to *.lisp...
  76 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  77 ;;; NOT secure against serving multiple architectures/hardwares from
  78 ;;; the same file system (i.e. PPC and x86 would not be
  79 ;;; differentiated).
  80
  81 (defclass lispstat-lsp-source-file (cl-source-file) ())
  82 (defparameter *fasl-directory*
  83    (make-pathname :directory '(:relative
  84                                #+sbcl "sbcl-fasl"
  85                                #+openmcl "openmcl-fasl"
  86                                #+cmu "cmucl-fasl"
  87                                #+clisp "clisp-fasl"
  88                                #-(or sbcl openmcl clisp cmucl) "fasl"
  89                                )))
  90
  91
  92 ;;; Handle Luke's *.lsp suffix
  93 (defmethod source-file-type ((c lispstat-lsp-source-file) (s module)) "lsp")
  94 (defmethod asdf::output-files :around ((operation compile-op)
  95                                        (c lispstat-lsp-source-file))
  96   (list (merge-pathnames *fasl-directory*
  97                          (compile-file-pathname (component-pathname c)))))
  98 ;;; again, thanks to Cyrus for saving me time...
  99
 100
 101 (defsystem "lispstat"
 102   :version #.(with-open-file
 103                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
 104                (read vers))
 105   :author "A.J. Rossini <blindglobe@gmail.com>"
 106   :license "BSD"
 107   :description "CommonLispStat (CLS): A System for Statistical
 108   Computing with Common Lisp; based on CLS alpha1 by Luke Tierney
 109   <luke@stat.uiowa.edu> (apparently originally written when Luke was
 110   at CMU, on leave somewhere?).   Last touched by him in 1991, then in
 111   2005--2009."
 112   :serial t
 113   :depends-on (:cffi :lisp-matrix :lift)
 114   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 115                (:static-file "LICENSE")
 116                (:static-file "README")
 117
 118                ;; reading in DSV files for data access
 119                (:module
 120                 "csv-data"
 121                 :pathname "src/data/"
 122                 :components
 123                 ((:file "test-cybertiggyr")
 124                  (:file "dsv-cybertiggyr" :depends-on ( "test-cybertiggyr"))))
 125
 126                (:module
 127                 "packaging"
 128                 :pathname #p"src/"
 129                 :depends-on ("csv-data")
 130                 :components
 131                 ((:file "packages")))
 132
 133                (:module
 134                 "proto-objects"
 135                 :pathname "src/objsys/"
 136                 :serial t
 137                 :depends-on ("packaging")
 138                 :components
 139                 ((:lispstat-lsp-source-file "lsobjects")))
 140
 141                (:module "lispstat-core"
 142                         :pathname "src/basics/"
 143                         :serial t
 144                         :depends-on ("packaging" "proto-objects")
 145                         :components
 146                         (; (:lispstat-lsp-source-file "defsys")
 147                          (:lispstat-lsp-source-file "lstypes")
 148                          (:lispstat-lsp-source-file "lsfloat")
 149
 150                          (:lispstat-lsp-source-file "compound")
 151                          (:lispstat-lsp-source-file "lsmacros"
 152                                                     :depends-on ("compound"))
 153
 154                          (:lispstat-lsp-source-file "lsmath"
 155                                                     :depends-on ("compound"
 156                                                                  "lsmacros"
 157                                                                  "lsfloat"))))
 158
 159                (:module
 160                 "numerics-internal"
 161                 :pathname "src/numerics/"
 162                 :depends-on ("packaging" "proto-objects" "lispstat-core")
 163                 :components
 164                 ((:lispstat-lsp-source-file "cffiglue")
 165                  (:lispstat-lsp-source-file "dists"
 166                                             :depends-on ("cffiglue"))
 167 #|
 168                  (:lispstat-lsp-source-file "matrices"
 169                                             :depends-on ("cffiglue"))
 170                  (:lispstat-lsp-source-file "ladata"
 171                                             :depends-on ("cffiglue"
 172                                                          "matrices"))
 173                  (:file "linalg"
 174                         :depends-on ("cffiglue"
 175                                      "matrices"
 176                                      "ladata"))
 177 |#
 178                  ))
 179
 180
 181                ;; prototype and CLOS approaches.
 182                (:module
 183                 "stat-data"
 184                 :pathname "src/data/"
 185                 :depends-on ("packaging"
 186                              "proto-objects"
 187                              "lispstat-core"
 188                              "numerics-internal")
 189                 :components
 190                 ((:file "data-clos")
 191                  (:file "data")))
 192
 193                (:module
 194                 "lispstat-basics"
 195                 :pathname "src/basics/"
 196                 :depends-on ("packaging"
 197                              "proto-objects"
 198                              "lispstat-core"
 199                              "numerics-internal"
 200                              "stat-data")
 201                 :components
 202                 ((:lispstat-lsp-source-file "lsbasics")))
 203
 204
 205
 206                (:module
 207                 "descriptives"
 208                 :pathname "src/describe/"
 209                 :depends-on ("packaging"
 210                              "proto-objects"
 211                              "lispstat-core"
 212                              "numerics-internal"
 213                              "stat-data"
 214                              "lispstat-basics")
 215                 :components
 216                 ((:lispstat-lsp-source-file "statistics")))
 217
 218                (:module
 219                 "optimization"
 220                 :pathname "src/numerics/"
 221                 :depends-on ("packaging"
 222                              "proto-objects"
 223                              "lispstat-core"
 224                              "numerics-internal"
 225                              "stat-data"
 226                              "lispstat-basics")
 227                 :components
 228                 ((:file "optimize")))
 229
 230
 231                ;; Applications
 232                (:module
 233                 "stat-models"
 234                 :pathname "src/stat-models/"
 235                 :depends-on ("packaging"
 236                              "proto-objects"
 237                              "lispstat-core"
 238                              "numerics-internal"
 239                              "lispstat-basics"
 240                              "descriptives"
 241                              "optimization")
 242                 :components
 243                 ((:file "regression")
 244                  ;; (:lispstat-lsp-source-file "nonlin"
 245                  ;;       :depends-on ("regression"))
 246                  ;; (:lispstat-lsp-source-file "bayes"
 247                  ;;       :depends-on ("regression"))
 248                  ))
 249
 250                ;; Applications
 251                (:module
 252                 "example-data"
 253                 :pathname "Data/"
 254                 :depends-on ("packaging"
 255                              "proto-objects"
 256                              "lispstat-core"
 257                              "numerics-internal"
 258                              "lispstat-basics"
 259                              "descriptives"
 260                              "optimization")
 261                 :components
 262                 ((:file "examples")
 263                  (:lispstat-lsp-source-file "absorbtion")
 264                  (:lispstat-lsp-source-file "diabetes")
 265                  (:lispstat-lsp-source-file "leukemia")
 266                  (:lispstat-lsp-source-file "randu")
 267                  (:lispstat-lsp-source-file "aircraft")
 268                  (:lispstat-lsp-source-file "metabolism")
 269                  (:lispstat-lsp-source-file "book")
 270                  (:lispstat-lsp-source-file "heating")
 271                  (:lispstat-lsp-source-file "oxygen")
 272                  (:lispstat-lsp-source-file "stackloss")
 273                  (:lispstat-lsp-source-file "car-prices")
 274                  (:lispstat-lsp-source-file "iris")
 275                  (:lispstat-lsp-source-file "puromycin")
 276                  (:lispstat-lsp-source-file "tutorial")))
 277
 278                (:module
 279                  "lisp-stat-unittest"
 280                 :depends-on  ("packaging" "proto-objects"
 281                               "lispstat-core"
 282                               "numerics-internal"
 283                               "stat-data"
 284                               "lispstat-basics"
 285                               "descriptives"
 286                               "optimization"
 287                               "stat-models"
 288                               "example-data")
 289                  :pathname "src/unittests/"
 290                  :components ((:file "unittests")
 291                               (:file "unittests-lstypes" :depends-on ("unittests"))
 292                               (:file "unittests-specfn" :depends-on ("unittests"))
 293                               (:file "unittests-prob" :depends-on ("unittests"))
 294                               (:file "unittests-proto" :depends-on ("unittests"))
 295                               (:file "unittests-regression" :depends-on ("unittests"))
 296                               ;; not ready yet:
 297                               ;; (:file "unittests-data-clos" :depends-on ("unittests"))
 298                               ;; changing linear algebra system
 299                               ;; (:file "unittests-arrays" :depends-on ("unittests"))
 300                               ))))