lispstat.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Copyright (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   3 ;;; ASDF packaging for CommonLisp Stat
   4 ;;; License: BSD, see the top level directory file LICENSE for details.
   5 ;;; Time-stamp: <2008-11-19 01:22:59 tony>
   6 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   7
   8 (in-package :cl-user)
   9
  10 (defpackage :lisp-stat-config
  11   (:use :common-lisp)
  12   (:export *default-path*
  13            *lsos-files* *basic-files* *ls-files*
  14            *lispstat-home-dir*
  15            *lispstat-data-dir* *lispstat-examples-dir*))
  16
  17 (in-package :lisp-stat-config)
  18
  19 (defparameter *lispstat-home-dir*
  20   (directory-namestring
  21    (truename (asdf:system-definition-pathname :lispstat)))
  22   "Value considered \"home\" for our data")
  23
  24 #|
  25   (setf *lispstat-home-dir*
  26       (directory-namestring (truename (asdf:system-definition-pathname
  27                                        :lispstat))))
  28 |#
  29
  30 (macrolet ((ls-dir (root-str)
  31              `(pathname (concatenate 'string
  32                                      (namestring *lispstat-home-dir*) ,root-str)))
  33
  34            (ls-defdir (target-dir-var  root-str)
  35              `(defvar ,target-dir-var (ls-dir ,root-str))))
  36
  37   ;; reminder of testing
  38   ;;(macroexpand '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  39   ;;(macroexpand-1 '(ls-defdir *lispstat-asdf-dir* "ASDF"))
  40   ;;(macroexpand-1 '(ls-dir "ASDF"))
  41
  42   (ls-defdir *lispstat-asdf-dir* "ASDF/")
  43   (ls-defdir *lispstat-data-dir* "Data/")
  44   (ls-defdir *lispstat-external-dir* "external/")
  45 )
  46
  47 (pushnew *lispstat-asdf-dir* asdf:*central-registry*)
  48 ;; (pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  49
  50 ;;; back to our regularly scheduled work...
  51 ;;; We should not need these, I think, but?
  52 ;; (asdf:oos 'asdf:compile-op :cffi)            ;; FFI
  53 ;; (asdf:oos 'asdf:compile-op :lift)            ;; Unit Testing
  54 ;; (asdf:oos 'asdf:load-op :cffi)            ;; FFI
  55 ;; (asdf:oos 'asdf:load-op :lift)            ;; Unit Testing
  56
  57 ;;; MAJOR HACK, FIXME!
  58 ;;(load "/media/disk/Desktop/sandbox/matlisp.git/start.lisp")
  59
  60 (in-package :cl-user)
  61
  62 (defpackage #:lispstat-system
  63     (:use :common-lisp :asdf))
  64
  65 (in-package #:lispstat-system)
  66
  67 ;;; To avoid renaming everything from *.lsp to *.lisp...
  68 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  69 ;;; NOT secure against serving multiple architectures/hardwares from
  70 ;;; the same file system (i.e. PPC and x86 would not be
  71 ;;; differentiated).
  72
  73 (defclass lispstat-lsp-source-file (cl-source-file) ())
  74 (defparameter *fasl-directory*
  75    (make-pathname :directory '(:relative
  76                                #+sbcl "sbcl-fasl"
  77                                #+openmcl "openmcl-fasl"
  78                                #+cmu "cmucl-fasl"
  79                                #+clisp "clisp-fasl"
  80                                #-(or sbcl openmcl clisp cmucl) "fasl"
  81                                )))
  82
  83
  84 ;;; Handle Luke's *.lsp suffix
  85 (defmethod source-file-type ((c lispstat-lsp-source-file) (s module)) "lsp")
  86 (defmethod asdf::output-files :around ((operation compile-op)
  87                                        (c lispstat-lsp-source-file))
  88   (list (merge-pathnames *fasl-directory*
  89                          (compile-file-pathname (component-pathname c)))))
  90 ;;; again, thanks to Cyrus for saving me time...
  91
  92
  93 (defsystem "lispstat"
  94   :version #.(with-open-file
  95                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
  96                (read vers))
  97   :author "A.J. Rossini <blindglobe@gmail.com>"
  98   :license "BSD"
  99   :description "CommonLispStat (CLS): A System for Statistical
 100   Computing with Common Lisp; based on CLS alpha1 by Luke Tierney
 101   <luke@stat.uiowa.edu> (apparently originally written when Luke was
 102   at CMU, on leave somewhere?).   Last touched by him in 1991, then in
 103   2005--2008."
 104   :serial t
 105   :depends-on (:cffi  :lift :lisp-matrix) ;; need a matrix library
 106   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 107                (:static-file "LICENSE")
 108                (:static-file "README")
 109
 110                (:module "packaging"
 111                         :pathname #p"src/"
 112                         :components
 113                         ((:file "packages")))
 114
 115                (:module "proto-objects"
 116                         :pathname "src/objsys/"
 117                         :serial t
 118                         :depends-on ("packaging")
 119                         :components
 120                         ((:lispstat-lsp-source-file "lsobjects")))
 121
 122                (:module "lispstat-core"
 123                         :pathname "src/basics/"
 124                         :serial t
 125                         :depends-on ("packaging" "proto-objects")
 126                         :components
 127                         (; (:lispstat-lsp-source-file "defsys")
 128                          (:lispstat-lsp-source-file "lstypes")
 129                          (:lispstat-lsp-source-file "lsfloat")
 130
 131                          (:lispstat-lsp-source-file "compound")
 132                          (:lispstat-lsp-source-file "lsmacros"
 133                                                     :depends-on ("compound"))
 134
 135                          (:lispstat-lsp-source-file "lsmath"
 136                                                     :depends-on ("compound"
 137                                                                  "lsmacros"
 138                                                                  "lsfloat"))))
 139
 140                (:module
 141                 "numerics-internal"
 142                 :pathname "src/numerics/"
 143                 :depends-on ("packaging" "proto-objects" "lispstat-core")
 144                 :components
 145                 ((:lispstat-lsp-source-file "cffiglue")
 146                  (:lispstat-lsp-source-file "dists"
 147                                             :depends-on ("cffiglue"))
 148                  (:lispstat-lsp-source-file "matrices"
 149                                             :depends-on ("cffiglue"))
 150                  (:lispstat-lsp-source-file "ladata"
 151                                             :depends-on ("cffiglue"
 152                                                          "matrices"))
 153                  (:lispstat-lsp-source-file "linalg"
 154                                             :depends-on ("cffiglue"
 155                                                          "matrices"
 156                                                          "ladata"))))
 157
 158                ;; prototype and CLOS approaches.
 159                (:module
 160                 "stat-data"
 161                 :pathname "src/data/"
 162                 :depends-on ("packaging"
 163                              "proto-objects"
 164                              "lispstat-core"
 165                              "numerics-internal")
 166                 :components
 167                 ((:file "data-clos")
 168                  (:file "data")))
 169
 170                (:module
 171                 "lispstat-basics"
 172                 :pathname "src/basics/"
 173                 :depends-on ("packaging"
 174                              "proto-objects"
 175                              "lispstat-core"
 176                              "numerics-internal"
 177                              "stat-data")
 178                 :components
 179                 ((:lispstat-lsp-source-file "lsbasics")))
 180
 181
 182                (:module
 183                 "descriptives"
 184                 :pathname "src/describe/"
 185                 :depends-on ("packaging"
 186                              "proto-objects"
 187                              "lispstat-core"
 188                              "numerics-internal"
 189                              "stat-data"
 190                              "lispstat-basics")
 191                 :components
 192                 ((:lispstat-lsp-source-file "statistics")))
 193
 194                (:module
 195                 "optimization"
 196                 :pathname "src/numerics/"
 197                 :depends-on ("packaging"
 198                              "proto-objects"
 199                              "lispstat-core"
 200                              "numerics-internal"
 201                              "stat-data"
 202                              "lispstat-basics")
 203                 :components
 204                 ((:file "optimize")))
 205
 206
 207                ;; Applications
 208                (:module
 209                 "stat-models"
 210                 :pathname "src/stat-models/"
 211                 :depends-on ("packaging"
 212                              "proto-objects"
 213                              "lispstat-core"
 214                              "numerics-internal"
 215                              "lispstat-basics"
 216                              "descriptives"
 217                              "optimization")
 218                 :components
 219                 ((:lispstat-lsp-source-file "regression")
 220                  ;; (:lispstat-lsp-source-file "nonlin"
 221                  ;;       :depends-on ("regression"))
 222                  ;; (:lispstat-lsp-source-file "bayes"
 223                  ;;       :depends-on ("regression"))
 224                  ))
 225
 226                ;; Applications
 227                (:module
 228                 "example-data"
 229                 :pathname "Data/"
 230                 :depends-on ("packaging"
 231                              "proto-objects"
 232                              "lispstat-core"
 233                              "numerics-internal"
 234                              "lispstat-basics"
 235                              "descriptives"
 236                              "optimization")
 237                 :components
 238                 ((:file "examples")
 239                  (:lispstat-lsp-source-file "absorbtion")
 240                  (:lispstat-lsp-source-file "diabetes")
 241                  (:lispstat-lsp-source-file "leukemia")
 242                  (:lispstat-lsp-source-file "randu")
 243                  (:lispstat-lsp-source-file "aircraft")
 244                  (:lispstat-lsp-source-file "metabolism")
 245                  (:lispstat-lsp-source-file "book")
 246                  (:lispstat-lsp-source-file "heating")
 247                  (:lispstat-lsp-source-file "oxygen")
 248                  (:lispstat-lsp-source-file "stackloss")
 249                  (:lispstat-lsp-source-file "car-prices")
 250                  (:lispstat-lsp-source-file "iris")
 251                  (:lispstat-lsp-source-file "puromycin")
 252                  (:lispstat-lsp-source-file "tutorial")))
 253
 254                (:module
 255                  "lisp-stat-unittest"
 256                 :depends-on  ("packaging" "proto-objects"
 257                               "lispstat-core"
 258                               "numerics-internal"
 259                               "stat-data"
 260                               "lispstat-basics"
 261                               "descriptives"
 262                               "optimization"
 263                               "stat-models"
 264                               "example-data")
 265                  :pathname "src/unittests/"
 266                  :components ((:file "unittests")
 267                               (:file "unittests-lstypes" :depends-on ("unittests"))
 268                               (:file "unittests-specfn" :depends-on ("unittests"))
 269                               (:file "unittests-prob" :depends-on ("unittests"))
 270                               (:file "unittests-proto" :depends-on ("unittests"))
 271                               (:file "unittests-regression" :depends-on ("unittests"))
 272                               ;; not ready yet:
 273                               ;; (:file "unittests-data-clos" :depends-on ("unittests"))
 274                               (:file "unittests-arrays" :depends-on ("unittests"))))))