cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2009-12-23 08:40:18 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 ;; Load ASDF if it isn't loaded
  15 #-asdf(load (pathname (concatenate 'string (namestring *cls-external-dir*) "asdf")))
  16
  17 (in-package :cl-user)
  18
  19 ;;; enforce all floating reads as doubles
  20 ;; (setf *read-default-float-format* 'double-float)
  21
  22 ;;; optimization settings
  23 ;; (proclaim '(optimize (safety 2) (space 3) (speed 3)))
  24
  25 (defpackage :lisp-stat-config
  26   (:documentation "holds configuration variables, support functions, and ASDF structure.")
  27   (:use :common-lisp)
  28   (:export *common-lisp-stat-version*
  29            *default-path*
  30            *lsos-files* *basic-files* *ls-files*
  31            *cls-home-dir* *cls-data-dir* *cls-examples-dir*))
  32
  33 (in-package :lisp-stat-config)
  34
  35
  36
  37 (defvar *common-lisp-stat-version* "1.0 Alpha 1")
  38 (defvar *default-path* "./")
  39
  40
  41 (defparameter *cls-home-dir*
  42   (directory-namestring
  43    (truename (asdf:system-definition-pathname :cls)))
  44   "Value considered \"home\" for our data")
  45
  46 #|
  47 (setf *cls-home-dir*
  48       ;; #p"/cygdrive/c/local/sandbox/Lisp/CommonLispStat/"w
  49       ;; #p"/home/tony/sandbox/CommonLispStat.git/"
  50       #p"/home/tony/sandbox/CLS.git/")
  51 |#
  52
  53 (macrolet ((ls-dir (root-str)
  54              `(pathname (concatenate 'string
  55                                      (namestring *cls-home-dir*) ,root-str)))
  56
  57            (ls-defdir (target-dir-var  root-str)
  58              `(defvar ,target-dir-var (ls-dir ,root-str))))
  59   (ls-defdir *cls-asdf-dir* "ASDF/")
  60   (ls-defdir *cls-data-dir* "Data/")
  61   (ls-defdir *cls-external-dir* "external/")
  62   ;; reminder of testing
  63   ;;(macroexpand '(ls-defdir *cls-asdf-dir* "ASDF"))
  64   ;;(macroexpand-1 '(ls-defdir *cls-asdf-dir* "ASDF"))
  65   ;;(macroexpand-1 '(ls-dir "ASDF"))
  66   )
  67
  68 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  69 ;;(pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  70
  71 (defpackage #:cls-system
  72     (:use :common-lisp :asdf))
  73
  74 (in-package #:cls-system)
  75
  76 ;;; To avoid renaming everything from *.lsp to *.lisp...
  77 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  78 ;;; NOT secure against serving multiple architectures/hardwares from
  79 ;;; the same file system (i.e. PPC and x86 would not be
  80 ;;; differentiated).
  81
  82 (defclass cls-lsp-source-file (cl-source-file) ())
  83 (defparameter *fasl-directory*
  84    (make-pathname :directory '(:relative
  85                                #+sbcl "fasl-sbcl"
  86                                #+openmcl "fasl-ccl"
  87                                #+openmcl "fasl-ccl"
  88                                #+cmu "fasl-cmucl"
  89                                #+clisp "fasl-clisp"
  90                                #-(or sbcl openmcl clisp cmucl) "fasl"
  91                                )))
  92
  93
  94 ;;; Handle Luke's *.lsp suffix
  95 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  96 (defmethod asdf::output-files :around ((operation compile-op)
  97                                        (c cls-lsp-source-file))
  98   (list (merge-pathnames *fasl-directory*
  99                          (compile-file-pathname (component-pathname c)))))
 100 ;;; again, thanks to Cyrus for saving me time...
 101
 102
 103 (defsystem "cls"
 104   :version #.(with-open-file
 105                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
 106                (read vers))
 107   :author "A.J. Rossini <blindglobe@gmail.com>"
 108   :license "BSD"
 109   :description "Common Lisp Statistics (CLS): A System for Statistical
 110   Computing with Common Lisp; based on Common LispStat (CLS alpha1) by
 111   Luke Tierney <luke@stat.uiowa.edu> (apparently originally written
 112   when Luke was at CMU, on leave at Bell Labs?).  Last touched by him
 113   in 1991, then by AJR starting in 2005."
 114   :serial t
 115   :depends-on (:cffi
 116                :xarray
 117                :lisp-matrix ; on fnv, cl-blapack, ffa
 118                :listoflist
 119                :lift
 120                :rsm-string
 121                ;;    :cl-cairo2  :cl-2d
 122                )
 123   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 124                (:static-file "LICENSE")
 125                (:static-file "README")
 126
 127                (:module
 128                 "packaging"
 129                 :pathname #p"src/"
 130                 :components
 131                 ((:file "packages")))
 132
 133                (:module
 134                 "proto-objects"
 135                 :pathname "src/objsys/"
 136                 :serial t
 137                 :depends-on ("packaging")
 138                 :components
 139                 ((:cls-lsp-source-file "lsobjects")))
 140
 141                (:module "cls-core"
 142                         :pathname "src/basics/"
 143                         :serial t
 144                         :depends-on ("packaging" "proto-objects")
 145                         :components
 146                         ((:cls-lsp-source-file "lstypes")
 147                          (:cls-lsp-source-file "lsfloat")
 148
 149                          (:cls-lsp-source-file "compound")
 150                          (:cls-lsp-source-file "lsmacros"
 151                                                     :depends-on ("compound"))
 152
 153                          (:cls-lsp-source-file "lsmath"
 154                                                     :depends-on ("compound"
 155                                                                  "lsmacros"
 156                                                                  "lsfloat"))))
 157
 158                (:module
 159                 "numerics-internal"
 160                 :pathname "src/numerics/"
 161                 :depends-on ("packaging" "proto-objects" "cls-core")
 162                 :components
 163                 ((:cls-lsp-source-file "cffiglue")
 164                  (:cls-lsp-source-file "dists"
 165                                             :depends-on ("cffiglue"))
 166 #|
 167                  (:cls-lsp-source-file "matrices"
 168                                             :depends-on ("cffiglue"))
 169                  (:cls-lsp-source-file "ladata"
 170                                             :depends-on ("cffiglue"
 171                                                          "matrices"))
 172                  (:file "linalg"
 173                         :depends-on ("cffiglue"
 174                                      "matrices"
 175                                      "ladata"))
 176 |#
 177                  ))
 178
 179
 180                ;; Dataframes and statistical structures.
 181                (:module
 182                 "stat-data"
 183                 :pathname "src/data/"
 184                 :depends-on ("packaging"
 185                              "proto-objects"
 186                              "cls-core"
 187                              "numerics-internal")
 188                 :components
 189                 ((:file "dataframe")
 190                  (:file "dataframe-array")
 191                  (:file "dataframe-matrixlike")
 192                  (:file "dataframe-listoflist")
 193                  (:file "data")
 194                  (:file "data-xls-compat")
 195                  (:file "import")))
 196
 197                (:module
 198                 "cls-basics"
 199                 :pathname "src/basics/"
 200                 :depends-on ("packaging"
 201                              "proto-objects"
 202                              "cls-core"
 203                              "numerics-internal"
 204                              "stat-data")
 205                 :components
 206                 ((:cls-lsp-source-file "lsbasics")))
 207
 208
 209
 210                (:module
 211                 "descriptives"
 212                 :pathname "src/describe/"
 213                 :depends-on ("packaging"
 214                              "proto-objects"
 215                              "cls-core"
 216                              "numerics-internal"
 217                              "stat-data"
 218                              "cls-basics")
 219                 :components
 220                 ((:cls-lsp-source-file "statistics")))
 221 #|
 222                (:module
 223                 "visualize"
 224                 :pathname "src/visualize/"
 225                 :depends-on ("cls-core")
 226                 :components
 227                 ((:file "plot")))
 228 |#
 229                (:module
 230                 "optimization"
 231                 :pathname "src/numerics/"
 232                 :depends-on ("packaging"
 233                              "proto-objects"
 234                              "cls-core"
 235                              "numerics-internal"
 236                              "stat-data"
 237                              "cls-basics")
 238                 :components
 239                 ((:file "optimize")))
 240
 241
 242                ;; Applications
 243                (:module
 244                 "stat-models"
 245                 :pathname "src/stat-models/"
 246                 :depends-on ("packaging"
 247                              "proto-objects"
 248                              "cls-core"
 249                              "numerics-internal"
 250                              "cls-basics"
 251                              "descriptives"
 252                              "optimization")
 253                 :components
 254                 ((:file "regression")
 255                  ;; (:cls-lsp-source-file "nonlin"
 256                  ;;       :depends-on ("regression"))
 257                  ;; (:cls-lsp-source-file "bayes"
 258                  ;;       :depends-on ("regression"))
 259                  ))
 260
 261                ;; Applications
 262                (:module
 263                 "example-data"
 264                 :pathname "Data/"
 265                 :depends-on ("packaging"
 266                              "proto-objects"
 267                              "cls-core"
 268                              "numerics-internal"
 269                              "cls-basics"
 270                              "descriptives"
 271                              "optimization")
 272                 :components
 273                 ((:file "examples")
 274                  (:cls-lsp-source-file "absorbtion")
 275                  (:cls-lsp-source-file "diabetes")
 276                  (:cls-lsp-source-file "leukemia")
 277                  (:cls-lsp-source-file "randu")
 278                  (:cls-lsp-source-file "aircraft")
 279                  (:cls-lsp-source-file "metabolism")
 280                  (:cls-lsp-source-file "book")
 281                  (:cls-lsp-source-file "heating")
 282                  (:cls-lsp-source-file "oxygen")
 283                  (:cls-lsp-source-file "stackloss")
 284                  (:cls-lsp-source-file "car-prices")
 285                  (:cls-lsp-source-file "iris")
 286                  (:cls-lsp-source-file "puromycin")
 287                  (:cls-lsp-source-file "tutorial")))
 288
 289                (:module
 290                  "lisp-stat-unittest"
 291                 :depends-on  ("packaging" "proto-objects"
 292                               "cls-core"
 293                               "numerics-internal"
 294                               "stat-data"
 295                               "cls-basics"
 296                               "descriptives"
 297                               "optimization"
 298                               "stat-models"
 299                               "example-data")
 300                  :pathname "src/unittests/"
 301                  :components ((:file "unittests")
 302                               (:file "unittests-lstypes" :depends-on ("unittests"))
 303                               (:file "unittests-specfn" :depends-on ("unittests"))
 304                               (:file "unittests-prob" :depends-on ("unittests"))
 305                               (:file "unittests-proto" :depends-on ("unittests"))
 306                               (:file "unittests-regression" :depends-on ("unittests"))
 307                               (:file "unittests-listoflist" :depends-on ("unittests"))
 308                               (:file "unittests-arrays" :depends-on ("unittests"))
 309                               (:file "unittests-dataframe" :depends-on ("unittests"))))))