document some tasks in dataframe.lisp that need resolution.
[CommonLispStat.git] / src / packages.lisp
blob9b30956e454e1a049b46fee159709782acf5e08a
1 ;;; -*- mode: lisp -*-
3 ;;; Time-stamp: <2012-10-05 04:08:40 tony>
4 ;;; Creation: <2008-03-11 19:18:34 user>
5 ;;; File: packages.lisp
6 ;;; Author: AJ Rossini <blindglobe@gmail.com>
7 ;;; Copyright: (c)2007--2010, AJ Rossini. MIT License. See
8 ;;; LICENSE.mit in top level directory for details.
9 ;;; Purpose: packages for Common Lisp Statistics
11 ;;; What is this talk of 'release'? Klingons do not make software
12 ;;; 'releases'. Our software 'escapes', leaving a bloody trail of
13 ;;; designers and quality assurance people in its wake.
15 (in-package :cl-user)
17 ;;; Current structure, dependencies:
19 '((:ls-user :depends-on lisp-stat)
20 (:lisp-stat :depends-on '(cls-dataframe
21 cls-data
22 lisp-matrix
24 (:cls-data :depends-on )
25 (:cls-dataframe :depends-on cls-data)
26 (:cls-dataio : )
27 (:cls-datatrans : )
28 |#
30 ;;; Basics
32 (defpackage :lisp-stat-config
33 (:documentation "holds Common Lisp Statistics configuration/loading variables and related functions.")
34 (:nicknames :cls-config)
35 (:use :common-lisp)
36 (:export *common-lisp-stat-version*
37 *default-path*
38 *lsos-files* *basic-files* *ls-files*
39 *cls-installation-home-dir* *cls-data-dir* *cls-examples-dir*))
41 (defpackage :lisp-stat-object-system
42 (:nicknames :ls-objects :lsos)
43 (:use :common-lisp)
44 (:shadow :call-method :call-next-method)
45 (:export ls-object objectp *object* kind-of-p make-object
46 *message-hook*
47 *set-slot-hook* proto-slot-value self
48 send call-next-method call-method
49 defmeth defproto instance-slots proto-name))
51 ;;; -types and -float probably ought to be moved into a -numerics
52 ;;; package.
54 (defpackage :lisp-stat-types
55 (:documentation "Provides some typeing for LispStat, but is clearly
56 a bit incomplete.")
57 (:use :common-lisp)
58 (:export fixnump
59 check-nonneg-fixnum check-one-nonneg-fixnum
60 check-one-fixnum check-one-real check-one-number))
62 (defpackage :lisp-stat-float
63 (:use :common-lisp)
64 (:export +stat-float-typing+ +stat-cfloat-typing+ +stat-float-template+
65 machine-epsilon base-float makedouble
67 make-base-trans-fun-2 make-base-trans-fun
69 base-log base-exp base-expt base-sqrt base-sin base-cos
70 base-tan base-asin base-acos base-atan base-sinh
71 BASE-COSH BASE-TANH BASE-ASINH BASE-ACOSH BASE-ATANH
72 BASE-ABS BASE-PHASE BASE-FFLOOR BASE-FCEILING BASE-FTRUNCATE
73 BASE-FROUND BASE-SIGNUM BASE-CIS))
75 ;;; Probably should move into cls-data package.
77 (defpackage :lisp-stat-compound-data
78 (:use :common-lisp
79 :lisp-stat-object-system
80 :lisp-stat-types)
81 (:shadowing-import-from :lisp-stat-object-system
82 call-next-method call-method)
83 (:export compound-data-p *compound-data-proto*
84 compound-object-p
85 compound-data-seq compound-data-length
86 element-list element-seq
87 sort-data order rank
88 recursive-map-elements map-elements repeat
89 check-sequence
90 get-next-element make-next-element set-next-element
91 ;; sequencep
92 iseq ordered-nneg-seq
93 select split-list which
94 difference rseq
95 flatten-list))
97 (defpackage :lisp-stat-macros
98 (:use :common-lisp
99 :lisp-stat-compound-data)
100 (:export make-rv-function make-rv-function-1))
102 (defpackage :lisp-stat-basics
103 (:use :common-lisp
104 :lisp-stat-object-system
105 :lisp-stat-types
106 :lisp-stat-float
107 :lisp-stat-macros
108 :lisp-stat-compound-data)
109 (:shadowing-import-from :lisp-stat-object-system
110 call-method call-next-method)
111 (:export permute-array sum prod count-elements mean
112 if-else sample))
114 (defpackage :lisp-stat-float
115 (:use :common-lisp)
116 (:export +stat-float-typing+ +stat-cfloat-typing+ +stat-float-template+
117 machine-epsilon base-float makedouble
119 make-base-trans-fun-2 make-base-trans-fun
121 BASE-LOG BASE-EXP BASE-EXPT BASE-SQRT BASE-SIN BASE-COS
122 BASE-TAN BASE-ASIN BASE-ACOS BASE-ATAN BASE-SINH
123 BASE-COSH BASE-TANH BASE-ASINH BASE-ACOSH BASE-ATANH
124 BASE-ABS BASE-PHASE BASE-FFLOOR BASE-FCEILING BASE-FTRUNCATE
125 BASE-FROUND BASE-SIGNUM BASE-CIS))
127 (defpackage :lisp-stat-macros
128 (:use :common-lisp
129 :lisp-stat-compound-data)
130 (:export make-rv-function make-rv-function-1))
132 ;;;;;;;; NEw CLS structure
134 (defpackage :cls-matrix
135 (:documentation "basic utilities for using lisp arrays as numerical
136 matrices. Not optimized, and must consider this slow. Routines
137 should be optimized, it is only that we need them first, optimize
138 them later.")
139 (:use :common-lisp)
140 (:export matrixp num-rows num-cols matmult identity-matrix diagonal
141 row-list column-list inner-product outer-product
142 cross-product transpose bind-columns bind-rows
143 array-data-vector vector-to-array))
145 ;;; NEW CLOS STRUCTURE
147 ;; CLS-DATA contains the basic variable structure, classes, support/indexing, and mixins.
148 ;; CLS-DATAFRAME leverages CLS-DATA, XARRAY, and LISP-MATRIX
149 ;; CLS-DATAIO stores/saves structures
150 ;; CLS-DATATRANS converts between structures, and from DATAFRAMES to MODEL-MATRIXES
152 (defpackage :cls-data
153 (:use :common-lisp)
154 (:shadowing-import-from :xarray slice)
155 (:export
156 ;; must work out what is needed for stat variable metadata, support
157 ;; functions, etc
160 ;;; cls-data... in dataframe, though.
161 (defpackage :cls-dataframe
162 (:use :common-lisp
163 :cls-data
164 :xarray
165 :lisp-matrix)
166 (:shadowing-import-from :xarray slice)
167 (:export
168 ;; generic container class for data -- if small enough
169 ;; could be value, otherwise might be reference.
170 dataframe-like
171 dataframe-array
172 make-dataframe
174 dataset
175 list-of-columns ;; list-of-variables
176 list-of-rows ;; list-of-observations
178 ;; accessors
179 varlabels caselabels nrows ncols
180 dataframe-dimension dataframe-dimensons
181 xref xtype xdims xdim xrank slice take carray
183 ;; support
184 make-labels))
186 (defpackage :cls-dataio
187 (:documentation "Data I/O and similar import technologies.")
188 (:use :common-lisp
189 :rsm.string
190 :lisp-stat-object-system
191 :cls-data
192 :cls-dataframe)
193 (:shadowing-import-from :lisp-stat-object-system
194 call-method call-next-method)
195 (:export dsvstream->dataframe
196 dsvstream->matrix
197 dsvstream->listoflist
199 filename.dsv->dataframe))
201 (defpackage :cls-datatrans
202 (:documentation "Data I/O and similar import technologies.")
203 (:use :common-lisp
204 :listoflist
205 :lisp-stat-object-system
206 :cls-data
207 :cls-dataframe)
208 (:shadowing-import-from :lisp-stat-object-system
209 call-method call-next-method)
210 (:export listoflist->dataframe dataframe->listoflist
211 listoflist->array array->listoflist
212 listoflist->matrix-like matrix-like->listoflist))
214 ;;;; MODELING
216 (defpackage :lisp-stat-model
217 (:documentation "Model management for data analysis.")
218 (:use :common-lisp
219 :lisp-matrix)
220 (:export
221 ;; data structures for model and model/data combination
222 model statistical-model analysis))
224 ;;; visualization
226 (defpackage :cls-visualize
227 (:use :common-lisp
228 :lisp-matrix
229 :cls-dataframe)
230 (:shadowing-import-from :xarray slice)
234 (defpackage :cls-visualize-plplot
235 (:use :common-lisp
236 :lisp-matrix
237 :cls-dataframe
238 :cl-plplot-system)
239 (:export
240 ;; examples
241 plot-ex contour-plot-ex fn-contour-plot-ex shade-plot-ex 3D-plot-ex))
244 ;;; USER PACKAGES
246 ;; (defpackage :lisp-stat-ffi-int
247 ;; (:use :common-lisp
248 ;; :cffi)
249 ;; (:export ccl-store-integer ccl-store-double ccl-store-ptr
250 ;; get-buf ))
252 ;; (defpackage :lisp-stat-probability
253 ;; (:use :common-lisp
254 ;; :cffi
255 ;; :lisp-stat-ffi-int
256 ;; :lisp-stat-macros)
257 ;; (:export log-gamma set-seed
258 ;; uniform-rand
259 ;; normal-cdf normal-quant normal-dens normal-rand
260 ;; bivnorm-cdf
261 ;; cauchy-cdf cauchy-quant cauchy-dens cauchy-rand
262 ;; gamma-cdf gamma-quant gamma-dens gamma-rand
263 ;; chisq-cdf chisq-quant chisq-dens chisq-rand
264 ;; beta-cdf beta-quant beta-dens beta-rand
265 ;; t-cdf t-quant t-dens t-rand
266 ;; f-cdf f-quant f-dens f-rand
267 ;; poisson-cdf poisson-quant poisson-pmf poisson-rand
268 ;; binomial-cdf binomial-quant binomial-pmf binomial-rand))
270 (defpackage :cls-probability
271 (:use common-lisp
272 cl-variates
274 (:export probability-law distribution
275 density-fcn quantile-fcn survivorship-fcn ))
277 (defpackage :lisp-stat-math
278 (:use :common-lisp
279 :lisp-stat-object-system
280 :lisp-stat-macros
281 :lisp-stat-compound-data
282 :lisp-stat-float)
283 (:shadowing-import-from :lisp-stat-object-system
284 call-method call-next-method)
285 (:shadow expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
286 asin acos atan sinh cosh tanh asinh acosh atanh float random
287 truncate floor ceiling round minusp zerop plusp evenp oddp
288 < <= = /= >= > ;; complex
289 conjugate realpart imagpart phase
290 min max logand logior logxor lognot ffloor fceiling
291 ftruncate fround signum cis)
292 (:export ^ ** expt + - * / mod rem pmin pmax abs 1+ 1- log exp sqrt sin cos
293 tan asin acos atan sinh cosh tanh asinh acosh atanh float random
294 truncate floor ceiling round minusp zerop plusp evenp oddp < <= =
295 /= >= > ;; complex
296 conjugate realpart imagpart phase min max
297 logand logior logxor lognot ffloor fceiling ftruncate fround
298 signum cis)
299 (:documentation "Vectorization of numerical functions"))
302 #| ;; some of this goes back in, but not all of it?
303 (defpackage :lisp-stat-linalg
304 (:use :common-lisp
305 :cffi
306 :lisp-matrix
307 :lisp-stat-math
308 :lisp-stat-types
309 :lisp-stat-float
310 :lisp-stat-compound-data)
311 (:shadowing-import-from :lisp-stat-math
312 expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
313 asin acos atan sinh cosh tanh asinh acosh atanh float random
314 truncate floor ceiling round minusp zerop plusp evenp oddp
315 < <= = /= >= > complex conjugate realpart imagpart phase
316 min max logand logior logxor lognot ffloor fceiling
317 ftruncate fround signum cis)
318 (:export chol-decomp lu-decomp lu-solve determinant inverse
319 sv-decomp qr-decomp rcondest make-rotation spline
320 kernel-dens kernel-smooth
321 fft make-sweep-matrix sweep-operator ax+y eigen
323 check-real ;; for optimize
325 covariance-matrix matrix print-matrix solve
326 backsolve eigenvalues eigenvectors accumulate cumsum combine
327 lowess))
334 (defpackage :lisp-stat-data
335 (:documentation "Data management, integration, I/O, and other data technologies.")
336 (:nicknames :ls-data)
337 (:use :common-lisp
338 :lisp-stat-object-system
339 :lisp-stat-config
340 :lisp-stat-types
341 :lisp-stat-compound-data)
342 (:shadowing-import-from :lisp-stat-object-system
343 call-method call-next-method)
344 (:export
345 ;; generic structures
346 ;; Variables
347 empirical-statistical-variable
348 modelbased-statistical-variable
349 categorical-statistical-variable
350 nominal-statistical-variable
351 ordinal-statistical-variable
352 continuous-statistical-variable
354 ordering factor-levels nobs support pdmf draw
355 print-object
357 ;; Observations
358 statistical-observation
359 measurement-types record
360 ;; XLS compat tools
361 open-file-dialog read-data-file read-data-columns load-data
362 load-example *variables* *ask-on-redefine*
363 def variables savevar undef))
365 (defpackage :lisp-stat-descriptive-statistics
366 (:use :common-lisp
367 :lisp-matrix
368 :lisp-stat-data
369 :lisp-stat-math
370 :lisp-stat-compound-data
371 :lisp-stat-basics)
372 (:shadowing-import-from :lisp-stat-math ;; life is a vector!
373 expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
374 asin acos atan sinh cosh tanh asinh acosh atanh float random
375 truncate floor ceiling round minusp zerop plusp evenp oddp
376 < <= = /= >= > ;; complex
377 conjugate realpart imagpart phase
378 min max logand logior logxor lognot ffloor fceiling
379 ftruncate fround signum cis)
380 (:export mean standard-deviation variance
381 quantile median interquartile-range
382 fivnum sample))
384 (defpackage :lisp-stat-regression-linear
385 (:use :common-lisp
386 :lisp-matrix
387 :lisp-stat-basics
388 :lisp-stat-compound-data
389 :lisp-stat-descriptive-statistics )
390 (:shadowing-import-from :lisp-stat-object-system
391 call-method call-next-method)
392 (:export regression-model fit-model
394 estimates covariance-matrix
395 ;; functions for helpers
396 lm xtxinv
397 print-object ;; for method dispatch
400 (defpackage :common-lisp-statistics
401 (:documentation "Experimentation package for LispStat. Serious work
402 should be packaged up as a separate but similar package to help
403 drive reproducibility. By this I mean, creating a
404 data/analytics/analysis package with the minimal set of
405 objects/packages required.")
406 (:nicknames :cls :common-lisp-statistics :lisp-stat)
407 (:use :common-lisp
409 ;; extern packages
410 :xarray ;; generic reference -- internally supporting array, lol structs
411 :listoflist
412 :lisp-matrix ;; conversion to a more robust linalg approach
414 ;; intern packages
415 :lisp-stat-config
416 :lisp-stat-object-system
417 :lisp-stat-compound-data
418 ;; :lisp-stat-probability
419 :lisp-stat-types
420 :lisp-stat-float
421 :lisp-stat-basics
422 :lisp-stat-data
424 :cls-data
425 :cls-dataframe
426 :cls-dataio
427 :cls-datatrans
429 :lisp-stat-math
430 :lisp-stat-descriptive-statistics
431 :lisp-stat-regression-linear
432 :cls-visualize
433 ;; :cls-visualize-plplot
434 ;; :cls-visualize-cl2d
436 (:shadowing-import-from :xarray slice)
437 (:shadowing-import-from :lisp-stat-object-system
438 call-method call-next-method)
439 (:shadowing-import-from :lisp-stat-math
440 expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
441 asin acos atan sinh cosh tanh asinh acosh atanh float random
442 truncate floor ceiling round minusp zerop plusp evenp oddp
443 < <= = /= >= >
444 ;;complex
445 conjugate realpart imagpart phase
447 min max
448 logand logior logxor lognot
449 ffloor fceiling ftruncate fround
450 signum cis)
451 (:export
452 ;; lisp-stat-config:
453 *default-path* *lsos-files* *basic-files* *ls-files*
454 *cls-installation-home-dir* *cls-data-dir* *cls-examples-dir*
456 ;; lsobjects :
457 defproto defproto2
458 defmeth send proto-slot-value
460 ;; lstypes :
461 fixnump check-nonneg-fixnum check-one-fixnum
462 check-one-nonneg-fixnum
463 check-one-real check-one-number
465 ;; lsmacros:
467 ;; lsfloat :
468 machine-epsilon
470 ;; compound :
471 compound-data-p *compound-data-proto* compound-object-p
472 compound-data-seq compound-data-length
473 element-list element-seq
474 sort-data order rank
475 recursive-map-elements map-elements
476 repeat
477 check-sequence
478 get-next-element make-next-element set-next-element
479 ;; sequencep
480 iseq
481 ordered-nneg-seq
482 select which
483 difference rseq
485 ;; lsmath.lsp
486 ^ ** expt + - * / mod rem pmin pmax abs 1+ 1- log exp sqrt sin cos
487 tan asin acos atan sinh cosh tanh asinh acosh atanh float random
488 truncate floor ceiling round minusp zerop plusp evenp oddp < <= =
489 /= >= > ;; complex
490 conjugate realpart imagpart phase min max
491 logand logior logxor lognot ffloor fceiling ftruncate fround
492 signum cis
494 #| ;; The following need to be re-found in lisp-matrix...
496 ;; matrices.lisp
497 matrixp num-rows num-cols matmult identity-matrix diagonal row-list
498 column-list inner-product outer-product cross-product transpose
499 bind-columns bind-rows
501 ;; linalg.lisp
502 chol-decomp lu-decomp lu-solve determinant inverse
503 sv-decomp qr-decomp rcondest make-rotation spline
504 kernel-dens kernel-smooth
505 fft make-sweep-matrix sweep-operator ax+y eigen
506 check-real
507 covariance-matrix matrix print-matrix solve
508 backsolve eigenvalues eigenvectors accumulate cumsum combine
509 lowess
511 ;; in linalg.lisp, possibly not supported by matlisp
512 spline kernel-dens kernel-smooth
516 ;; optimize.lsp
517 ;; newtonmax nelmeadmax
519 ;; package LISPSTAT-MACROS
520 make-rv-function make-rv-function-1
522 ;; package XARRAY
523 xref xtype xdims xdim xdims*
525 ;; package LISTOFLIST
526 sublists-of-same-size-p equal-listoflist transpose-listoflist
528 ;; package DATA
529 ;; need to take this list and make it symbols... specs could mean
530 ;; that we process the strings in different ways? Create such a
531 ;; macro to enable export within this package?
533 (let ((lst ()))
534 (unlist
535 (mapc #'symbol-for-symbol-to-string-or-symbol
536 (do-external-symbols (s (find-package 'lisp-stat-data) lst) (push s lst))))
537 lst)
539 open-file-dialog read-data-file read-data-columns load-data
540 load-example *variables* *ask-on-redefine*
541 def variables savevar undef
542 ;; dataframe
543 dataframe-like dataframe-array make-dataframe
544 varlabels caselabels nrows ncols
545 dataframe-dimension dataframe-dimensons
546 dfref dfref-case dfref-var
547 consistent-dataframe-p
548 dataset list-of-columns list-of-rows
549 make-labels
551 ;; listoflist
552 listoflist->dataframe listoflist->array listoflist->matrix-like
553 sublists-of-same-size-p
555 ;; cls-dataio
556 dsvstream->dataframe dsvstream->matrix dsvstream->listoflist
557 filename.dsv->dataframe
559 ;; cls-datatrans
560 listoflist->dataframe dataframe->listoflist
561 listoflist->array array->listoflist
562 listoflist->matrix-like matrix-like->listoflist
565 ;; statistics.lsp (descriptions, should probably be moved
566 ;; later...?
567 standard-deviation quantile median interquartile-range
568 fivnum sample
570 ;; probability (dists.lisp)
571 ;; log-gamma set-seed
572 ;; uniform-rand normal-cdf normal-quant normal-dens
573 ;; normal-rand bivnorm-cdf cauchy-cdf cauchy-quant cauchy-dens
574 ;; cauchy-rand gamma-cdf gamma-quant gamma-dens gamma-rand
575 ;; chisq-cdf chisq-quant chisq-dens chisq-rand beta-cdf beta-quant
576 ;; beta-dens beta-rand t-cdf t-quant t-dens t-rand f-cdf f-quant
577 ;; f-dens f-rand poisson-cdf poisson-quant poisson-pmf poisson-rand
578 ;; binomial-cdf binomial-quant binomial-pmf binomial-rand
580 ;; Here is where we have a problem -- lispstat core should be core
581 ;; data management and config problems, with packages providing
582 ;; specialized extensions to LispStat, i.e. regression, nonlin
583 ;; regression, bayesian regression via laplace approximation, etc.
585 ;; The following could be considered "recommended packages",
586 ;; similar to the idea of the recommended packages in R. Probably
587 ;; we want them to do the exporting within that package, therefore
588 ;; NOT being able to lock the "data-ish" package, but only the
589 ;; subpackages prior to export.
591 ;; regression.lsp
592 ;; -- linear regressin models.
593 regression-model fit-model
594 estimates covariance-matrix
596 regression-model-proto x y intercept sweep-matrix
597 basis weights included total-sum-of-squares residual-sum-of-squares
598 predictor-names response-name case-labels
599 lm xtxinv
601 ;; nonlin.lsp
602 ;; -- nonlinear regression models
603 nreg-model nreg-model-proto mean-function theta-hat epsilon
604 count-limit verbose
605 ;; we might need something like xtxinv here? But should be
606 ;; encapsulated, so we use the one in regression.lisp
608 ;; bayes.lsp
609 bayes-model bayes-model-proto bayes-internals
611 ;; plots.lisp
612 plot-ex
613 contour-plot-ex
614 fn-contour-plot-ex
615 shade-plot-ex
616 3D-plot-ex
621 ;;;; PACKAGES FOR USEABILITY
623 (defpackage :lisp-stat-data-examples
624 (:documentation "Example data for unittests, examples, illustrations,")
625 (:use :common-lisp
626 :common-lisp-statistics)
627 (:shadowing-import-from :lisp-stat
628 call-method call-next-method
630 expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
631 asin acos atan sinh cosh tanh asinh acosh atanh float random
632 truncate floor ceiling round minusp zerop plusp evenp oddp
633 < <= = /= >= > > ;; complex
634 conjugate realpart imagpart phase
635 min max logand logior logxor lognot ffloor fceiling
636 ftruncate fround signum cis
638 <= float imagpart)
639 (:export iron aluminum absorbtion
640 diabetes dlabs))
643 (defpackage :lisp-stat-user
644 (:documentation "Experimentation package for LispStat. Serious work
645 should be placed in a similar package elsewhere for
646 reproducibility. But this should hint as to what needs to be done
647 for a user- or analysis-package.")
648 (:nicknames :ls-user :cls-user)
649 (:use :common-lisp ; always needed for user playgrounds!
650 :lisp-matrix
651 :common-lisp-statistics
652 :lisp-stat-data-examples) ;; this last is to have 'things to play with'
653 (:shadowing-import-from :lisp-stat
654 call-method call-next-method
656 expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
657 asin acos atan sinh cosh tanh asinh acosh atanh float random
658 truncate floor ceiling round minusp zerop plusp evenp oddp
659 < <= = /= >= > > ;; complex
660 conjugate realpart imagpart phase
661 min max logand logior logxor lognot ffloor fceiling
662 ftruncate fround signum cis
664 <= float imagpart))
666 (defpackage :lisp-stat-unittests
667 (:use :common-lisp
668 :lift :lisp-matrix
669 :lisp-stat :lisp-stat-data-examples)
670 (:shadowing-import-from :lisp-stat
671 call-method call-next-method ;; objects
672 expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan ;; lsmath
673 asin acos atan sinh cosh tanh asinh acosh atanh float random
674 truncate floor ceiling round minusp zerop plusp evenp oddp
675 < <= = /= >= > ;; complex
676 conjugate realpart imagpart phase
677 min max logand logior logxor lognot ffloor fceiling
678 ftruncate fround signum cis)
679 (:export run-lisp-stat-tests run-lisp-stat-test scoreboard ; exec
680 almost= almost=lists numerical=)) ; compare
682 (defpackage :cls-dataframe-example
683 (:use :common-lisp
684 :lift :lisp-stat-unittests
685 :lisp-stat-data-examples
686 :cls-dataframe)
687 (:export absorbtion aluminum iron))
690 ;; (defpackage :lisp-stat-optimize
691 ;; (:use :common-lisp
692 ;; :cffi
693 ;; :lisp-matrix
694 ;; :lisp-stat-ffi-int
695 ;; :lisp-stat-object-system
696 ;; :lisp-stat-types
697 ;; :lisp-stat-compound-data
698 ;; :lisp-stat-math
699 ;; :lisp-stat-float
700 ;; :lisp-stat-basics
701 ;; #|
702 ;; :lisp-stat-matrix
703 ;; :lisp-stat-linalg-data
704 ;; :lisp-stat-linalg
705 ;; |#
706 ;; )
707 ;; (:shadowing-import-from :lisp-stat-object-system
708 ;; call-method call-next-method)
709 ;; (:shadowing-import-from :lisp-stat-math
710 ;; expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
711 ;; asin acos atan sinh cosh tanh asinh acosh atanh float random
712 ;; truncate floor ceiling round minusp zerop plusp evenp oddp
713 ;; < <= = /= >= > complex conjugate realpart imagpart phase
714 ;; min max logand logior logxor lognot ffloor fceiling
715 ;; ftruncate fround signum cis)
716 ;; (:export
717 ;; ;; derivatives
718 ;; numgrad numhess
720 ;; ;; optimization
721 ;; newtonmax nelmeadmax))