cls.asd

   1 ;;  -*- mode: lisp -*-
   2 ;;; Time-stamp: <2010-01-03 16:32:56 tony>
   3 ;;; Created:    <2005-05-30 17:09:47 blindglobe>
   4 ;;; File:       cls.asd
   5 ;;; Author:     AJ Rossini <blindglobe@gmail.com>
   6 ;;; Copyright:  (c) 2005--2008, by AJ Rossini <blindglobe@gmail.com>
   7 ;;; License:    BSD, see the top level directory file LICENSE for details.
   8 ;;; Purpose:    ASDF packaging for CommonLisp Stat
   9
  10 ;;; What is this talk of 'release'? Klingons do not make software
  11 ;;; 'releases'.  Our software 'escapes', leaving a bloody trail of
  12 ;;; designers and quality assurance people in its wake.
  13
  14 ;; Load ASDF if it isn't loaded
  15 #-asdf(load (pathname (concatenate 'string (namestring *cls-external-dir*) "asdf")))
  16
  17 (in-package :cl-user)
  18
  19 ;;; enforce all floating reads as doubles
  20 ;; (setf *read-default-float-format* 'double-float)
  21
  22 ;;; optimization settings
  23 ;; (proclaim '(optimize (safety 2) (space 3) (speed 3)))
  24
  25 (defpackage :lisp-stat-config
  26   (:documentation "holds configuration variables, support functions, and ASDF structure.")
  27   (:nicknames :cls-config)
  28   (:use :common-lisp)
  29   (:export *common-lisp-stat-version*
  30            *default-path*
  31            *lsos-files* *basic-files* *ls-files*
  32            *cls-home-dir* *cls-data-dir* *cls-examples-dir*))
  33
  34 (in-package :lisp-stat-config)
  35
  36
  37
  38 (defvar *common-lisp-stat-version* "1.0 Alpha 1")
  39 (defvar *default-path* "./")
  40
  41
  42 (defparameter *cls-home-dir*
  43   (directory-namestring
  44    (truename (asdf:system-definition-pathname :cls)))
  45   "Value considered \"home\" for our data")
  46
  47 #|
  48 (setf *cls-home-dir*
  49       ;; #p"/cygdrive/c/local/sandbox/Lisp/CommonLispStat/"w
  50       ;; #p"/home/tony/sandbox/CommonLispStat.git/"
  51       #p"/home/tony/sandbox/CLS.git/")
  52 |#
  53
  54 (macrolet ((ls-dir (root-str)
  55              `(pathname (concatenate 'string
  56                                      (namestring *cls-home-dir*) ,root-str)))
  57
  58            (ls-defdir (target-dir-var  root-str)
  59              `(defvar ,target-dir-var (ls-dir ,root-str))))
  60   (ls-defdir *cls-asdf-dir* "ASDF/")
  61   (ls-defdir *cls-data-dir* "Data/")
  62   (ls-defdir *cls-external-dir* "external/")
  63   ;; reminder of testing
  64   ;;(macroexpand '(ls-defdir *cls-asdf-dir* "ASDF"))
  65   ;;(macroexpand-1 '(ls-defdir *cls-asdf-dir* "ASDF"))
  66   ;;(macroexpand-1 '(ls-dir "ASDF"))
  67   )
  68
  69 ;;(pushnew *cls-asdf-dir* asdf:*central-registry*)
  70 ;;(pushnew #p"C:/Lisp/libs/" asdf-util:*source-dirs* :test #'equal) ; eg for Microsoft
  71
  72 (defpackage #:cls-system
  73     (:use :common-lisp :asdf))
  74
  75 (in-package #:cls-system)
  76
  77 ;;; To avoid renaming everything from *.lsp to *.lisp...
  78 ;;; borrowed from Cyrus Harmon's work, for example for the ch-util.
  79 ;;; NOT secure against serving multiple architectures/hardwares from
  80 ;;; the same file system (i.e. PPC and x86 would not be
  81 ;;; differentiated).
  82
  83 (defclass cls-lsp-source-file (cl-source-file) ())
  84 (defparameter *fasl-directory*
  85    (make-pathname :directory '(:relative
  86                                #+sbcl "fasl-sbcl"
  87                                #+openmcl "fasl-ccl"
  88                                #+openmcl "fasl-ccl"
  89                                #+cmu "fasl-cmucl"
  90                                #+clisp "fasl-clisp"
  91                                #-(or sbcl openmcl clisp cmucl) "fasl"
  92                                )))
  93
  94
  95 ;;; Handle Luke's *.lsp suffix
  96 (defmethod source-file-type ((c cls-lsp-source-file) (s module)) "lsp")
  97 (defmethod asdf::output-files :around ((operation compile-op)
  98                                        (c cls-lsp-source-file))
  99   (list (merge-pathnames *fasl-directory*
 100                          (compile-file-pathname (component-pathname c)))))
 101 ;;; again, thanks to Cyrus for saving me time...
 102
 103
 104 (defsystem "cls"
 105   :version #.(with-open-file
 106                  (vers (merge-pathnames "version.lisp-expr" *load-truename*))
 107                (read vers))
 108   :author "A.J. Rossini <blindglobe@gmail.com>"
 109   :license "BSD"
 110   :description "Common Lisp Statistics (CLS): A System for Statistical
 111   Computing with Common Lisp; based on Common LispStat (CLS alpha1) by
 112   Luke Tierney <luke@stat.uiowa.edu> (apparently originally written
 113   when Luke was at CMU, on leave at Bell Labs?).  Last touched by him
 114   in 1991, then by AJR starting in 2005."
 115   :serial t
 116   :depends-on (:cffi
 117                :xarray
 118                :lisp-matrix ; on fnv, cl-blapack, ffa
 119                :listoflist
 120                :lift
 121                :rsm-string
 122                ;;    :cl-cairo2  :cl-2d
 123                )
 124   :components ((:static-file "version" :pathname #p"version.lisp-expr")
 125                (:static-file "LICENSE")
 126                (:static-file "README")
 127
 128                (:module
 129                 "packaging"
 130                 :pathname #p"src/"
 131                 :components
 132                 ((:file "packages")))
 133
 134                (:module
 135                 "proto-objects"
 136                 :pathname "src/objsys/"
 137                 :serial t
 138                 :depends-on ("packaging")
 139                 :components
 140                 ((:cls-lsp-source-file "lsobjects")))
 141
 142                (:module "cls-core"
 143                         :pathname "src/basics/"
 144                         :serial t
 145                         :depends-on ("packaging" "proto-objects")
 146                         :components
 147                         ((:cls-lsp-source-file "lstypes")
 148                          (:cls-lsp-source-file "lsfloat")
 149
 150                          (:cls-lsp-source-file "compound")
 151                          (:cls-lsp-source-file "lsmacros"
 152                                                     :depends-on ("compound"))
 153
 154                          (:cls-lsp-source-file "lsmath"
 155                                                     :depends-on ("compound"
 156                                                                  "lsmacros"
 157                                                                  "lsfloat"))))
 158
 159                (:module
 160                 "numerics-internal"
 161                 :pathname "src/numerics/"
 162                 :depends-on ("packaging" "proto-objects" "cls-core")
 163                 :components
 164                 ((:cls-lsp-source-file "cffiglue")
 165                  (:cls-lsp-source-file "dists"
 166                                             :depends-on ("cffiglue"))
 167 #|
 168                  (:cls-lsp-source-file "matrices"
 169                                             :depends-on ("cffiglue"))
 170                  (:cls-lsp-source-file "ladata"
 171                                             :depends-on ("cffiglue"
 172                                                          "matrices"))
 173                  (:file "linalg"
 174                         :depends-on ("cffiglue"
 175                                      "matrices"
 176                                      "ladata"))
 177 |#
 178                  ))
 179
 180
 181                ;; Dataframes and statistical structures.
 182                (:module
 183                 "stat-data"
 184                 :pathname "src/data/"
 185                 :depends-on ("packaging"
 186                              "proto-objects"
 187                              "cls-core"
 188                              "numerics-internal")
 189                 :components
 190                 ((:file "dataframe")
 191                  (:file "dataframe-array")
 192                  (:file "dataframe-matrixlike")
 193                  (:file "dataframe-listoflist")
 194                  (:file "data")
 195                  (:file "data-xls-compat")
 196                  (:file "import")))
 197
 198                (:module
 199                 "cls-basics"
 200                 :pathname "src/basics/"
 201                 :depends-on ("packaging"
 202                              "proto-objects"
 203                              "cls-core"
 204                              "numerics-internal"
 205                              "stat-data")
 206                 :components
 207                 ((:cls-lsp-source-file "lsbasics")))
 208
 209
 210
 211                (:module
 212                 "descriptives"
 213                 :pathname "src/describe/"
 214                 :depends-on ("packaging"
 215                              "proto-objects"
 216                              "cls-core"
 217                              "numerics-internal"
 218                              "stat-data"
 219                              "cls-basics")
 220                 :components
 221                 ((:cls-lsp-source-file "statistics")))
 222 #|
 223                (:module
 224                 "visualize"
 225                 :pathname "src/visualize/"
 226                 :depends-on ("cls-core")
 227                 :components
 228                 ((:file "plot")))
 229 |#
 230                (:module
 231                 "optimization"
 232                 :pathname "src/numerics/"
 233                 :depends-on ("packaging"
 234                              "proto-objects"
 235                              "cls-core"
 236                              "numerics-internal"
 237                              "stat-data"
 238                              "cls-basics")
 239                 :components
 240                 ((:file "optimize")))
 241
 242
 243                ;; Applications
 244                (:module
 245                 "stat-models"
 246                 :pathname "src/stat-models/"
 247                 :depends-on ("packaging"
 248                              "proto-objects"
 249                              "cls-core"
 250                              "numerics-internal"
 251                              "cls-basics"
 252                              "descriptives"
 253                              "optimization")
 254                 :components
 255                 ((:file "regression")
 256                  ;; (:cls-lsp-source-file "nonlin"
 257                  ;;       :depends-on ("regression"))
 258                  ;; (:cls-lsp-source-file "bayes"
 259                  ;;       :depends-on ("regression"))
 260                  ))
 261
 262                ;; Applications
 263                (:module
 264                 "example-data"
 265                 :pathname "Data/"
 266                 :depends-on ("packaging"
 267                              "proto-objects"
 268                              "cls-core"
 269                              "numerics-internal"
 270                              "cls-basics"
 271                              "descriptives"
 272                              "optimization")
 273                 :components
 274                 ((:file "examples")
 275                  (:cls-lsp-source-file "absorbtion")
 276                  (:cls-lsp-source-file "diabetes")
 277                  (:cls-lsp-source-file "leukemia")
 278                  (:cls-lsp-source-file "randu")
 279                  (:cls-lsp-source-file "aircraft")
 280                  (:cls-lsp-source-file "metabolism")
 281                  (:cls-lsp-source-file "book")
 282                  (:cls-lsp-source-file "heating")
 283                  (:cls-lsp-source-file "oxygen")
 284                  (:cls-lsp-source-file "stackloss")
 285                  (:cls-lsp-source-file "car-prices")
 286                  (:cls-lsp-source-file "iris")
 287                  (:cls-lsp-source-file "puromycin")
 288                  (:cls-lsp-source-file "tutorial")))
 289
 290                (:module
 291                  "lisp-stat-unittest"
 292                 :depends-on  ("packaging" "proto-objects"
 293                               "cls-core"
 294                               "numerics-internal"
 295                               "stat-data"
 296                               "cls-basics"
 297                               "descriptives"
 298                               "optimization"
 299                               "stat-models"
 300                               "example-data")
 301                  :pathname "src/unittests/"
 302                  :components ((:file "unittests")
 303                               (:file "unittests-lstypes" :depends-on ("unittests"))
 304                               (:file "unittests-specfn" :depends-on ("unittests"))
 305                               (:file "unittests-prob" :depends-on ("unittests"))
 306                               (:file "unittests-proto" :depends-on ("unittests"))
 307                               (:file "unittests-regression" :depends-on ("unittests"))
 308                               (:file "unittests-listoflist" :depends-on ("unittests"))
 309                               (:file "unittests-arrays" :depends-on ("unittests"))
 310                               (:file "unittests-dataframe" :depends-on ("unittests"))))))
 311
 312
 313 #|
 314  (defmethod perform ((o test-op) (c (eql (find-system :cls))))
 315   (flet ((run-tests (&rest args)
 316            (apply (intern (string '#:run-tests) '#:cffi-tests) args)))
 317     (run-tests :compiled nil)
 318     (run-tests :compiled t)))
 319 |#