ls-user.lisp

   1 ;;; -*- mode: lisp -*-
   2 ;;; Copyright (c) 2005--2007, by A.J. Rossini <blindglobe@gmail.com>
   3 ;;; See COPYRIGHT file for any additional restrictions (BSD license).
   4 ;;; Since 1991, ANSI was finally finished.  Edited for ANSI Common Lisp.
   5
   6 (defpackage :lisp-stat
   7     (:documentation "Experimentation package for LispStat.  Serious work
   8 should be packaged up elsewhere for reproducibility.")
   9   (:use :common-lisp
  10         :lisp-stat-object-system
  11         :lisp-stat-compound-data
  12         :lisp-stat-probability
  13         :lisp-stat-types
  14         :lisp-stat-float
  15         :lisp-stat-basics
  16         :lisp-stat-data
  17         :lisp-stat-math
  18         :lisp-stat-matrix
  19         :lisp-stat-linalg
  20         :lisp-stat-descriptive-statistics
  21         :lisp-stat-regression-linear)
  22   (:shadowing-import-from :lisp-stat-object-system
  23         slot-value call-method call-next-method)
  24   (:shadowing-import-from :lisp-stat-math
  25         expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
  26         asin acos atan sinh cosh tanh asinh acosh atanh float random
  27         truncate floor ceiling round minusp zerop plusp evenp oddp
  28         < <= = /= >= > ;;complex
  29         conjugate realpart imagpart phase
  30         min max logand logior logxor lognot ffloor fceiling
  31         ftruncate fround signum cis)
  32   (:export
  33    ;; lsobjects :
  34    defproto defmeth send
  35
  36    ;; lstypes :
  37    fixnump check-nonneg-fixnum check-one-fixnum
  38    check-one-real check-one-number
  39
  40    ;; lsmacros:
  41
  42    ;; lsfloat :
  43    machine-epsilon
  44
  45    ;; compound :
  46    compound-data-p *compound-data-proto* compound-object-p
  47    compound-data-seq compound-data-length
  48    element-list element-seq
  49    sort-data order rank
  50    recursive-map-elements map-elements
  51    repeat
  52    check-sequence
  53    get-next-element make-next-element set-next-element
  54    sequencep iseq
  55    ordered-nneg-seq
  56    select which
  57    difference rseq
  58
  59    ;; lsmath.lsp
  60    ^ ** expt + - * / mod rem pmin pmax abs 1+ 1- log exp sqrt sin cos
  61    tan asin acos atan sinh cosh tanh asinh acosh atanh float random
  62    truncate floor ceiling round minusp zerop plusp evenp oddp < <= =
  63    /= >= > ;; complex
  64    conjugate realpart imagpart phase min max
  65    logand logior logxor lognot ffloor fceiling ftruncate fround
  66    signum cis
  67
  68    ;; matrices.lisp
  69    matrixp num-rows num-cols matmult identity-matrix diagonal row-list
  70    column-list inner-product outer-product cross-product transpose
  71    bind-columns bind-rows
  72
  73    ;; linalg.lisp
  74    chol-decomp lu-decomp lu-solve determinant inverse
  75    sv-decomp qr-decomp rcondest make-rotation spline
  76    kernel-dens kernel-smooth
  77    fft make-sweep-matrix sweep-operator ax+y eigen
  78    check-real
  79    covariance-matrix matrix print-matrix solve
  80    backsolve eigenvalues eigenvectors accumulate cumsum combine
  81    lowess
  82
  83    ;; in linalg.lisp, possibly not supported by matlisp
  84    spline kernel-dens kernel-smooth
  85
  86    ;; optimize.lsp
  87    newtonmax nelmeadmax
  88
  89    ;; lispstat-macros
  90    make-rv-function make-rv-function-1
  91
  92    ;; data.lisp
  93    open-file-dialog read-data-file read-data-columns load-data
  94    load-example *variables* *ask-on-redefine*
  95    def variables savevar undef
  96
  97    ;; statistics.lsp
  98    standard-deviation quantile median interquartile-range
  99    fivnum sample
 100
 101    ;; dists
 102    log-gamma set-seed
 103    uniform-rand normal-cdf normal-quant normal-dens
 104    normal-rand bivnorm-cdf cauchy-cdf cauchy-quant cauchy-dens
 105    cauchy-rand gamma-cdf gamma-quant gamma-dens gamma-rand
 106    chisq-cdf chisq-quant chisq-dens chisq-rand beta-cdf beta-quant
 107    beta-dens beta-rand t-cdf t-quant t-dens t-rand f-cdf f-quant
 108    f-dens f-rand poisson-cdf poisson-quant poisson-pmf poisson-rand
 109    binomial-cdf binomial-quant binomial-pmf binomial-rand
 110
 111 ;;; Here is where we have a problem -- lispstat core should be core
 112 ;;; data management and config problems, with packages providing
 113 ;;; specialized extensions to LispStat, i.e. regression, nonlin
 114 ;;; regression, bayesian regression via laplace approximation, etc.
 115
 116 ;;; The following could be considered "recommended packages", similar
 117 ;;; to the idea of the recommended packages in R.
 118
 119    ;; regression.lsp
 120    regression-model regression-model-proto x y intercept sweep-matrix
 121    basis weights included total-sum-of-squares residual-sum-of-squares
 122    predictor-names response-name case-labels
 123
 124    ;; nonlin.lsp
 125    nreg-model nreg-model-proto mean-function theta-hat epsilon
 126    count-limit verbose
 127
 128    ;; bayes.lsp
 129    bayes-model bayes-model-proto bayes-internals))
 130
 131 (defpackage :lisp-stat-user
 132   (:documentation "Experimentation package for LispStat.
 133 Serious work should be placed in a similar package elsewhere for
 134 reproducibility.  But this should hint as to what needs to be
 135 done for a user- or analysis-package.")
 136   (:nicknames :ls-user)
 137   (:use :common-lisp
 138         :lisp-stat)
 139   (:shadowing-import-from :lisp-stat
 140       slot-value call-method call-next-method
 141
 142       expt + - * / ** mod rem abs 1+ 1- log exp sqrt sin cos tan
 143       asin acos atan sinh cosh tanh asinh acosh atanh float random
 144       truncate floor ceiling round minusp zerop plusp evenp oddp
 145       < <= = /= >= > > ;; complex
 146       conjugate realpart imagpart phase
 147       min max logand logior logxor lognot ffloor fceiling
 148       ftruncate fround signum cis
 149
 150       <= float imagpart))